Analysis of interatomic Contacts of Structural Units in PDB entry:
8R0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R0J entry

There are 4 chains in PDB entry 8R0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0PRO 182
B
 HIS 0PRO 182
C
 VAL 491ARG 780
D
 GLU 487ARG 780
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8R0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 26Right-handed alpha
Helix 2
AA2
A
42 53Right-handed alpha
Helix 3
AA3
A
95 107Right-handed alpha
Helix 4
AA4
B
19 26Right-handed alpha
Helix 5
AA5
B
42 53Right-handed alpha
Helix 6
AA6
B
95 107Right-handed alpha
Helix 7
AA7
C
491 498Right-handed 310
Helix 8
AA8
C
502 517Right-handed alpha
Helix 9
AA9
C
524 529Right-handed alpha
Helix 10
AB1
C
529 546Right-handed alpha
Helix 11
AB2
C
552 574Right-handed alpha
Helix 12
AB3
C
577 594Right-handed alpha
Helix 13
AB4
C
598 618Right-handed alpha
Helix 14
AB5
C
620 637Right-handed alpha
Helix 15
AB6
C
642 659Right-handed alpha
Helix 16
AB7
C
662 673Right-handed alpha
Helix 17
AB8
C
673 679Right-handed alpha
Helix 18
AB9
C
692 708Right-handed alpha
Helix 19
AC1
C
712 733Right-handed alpha
Helix 20
AC2
C
739 754Right-handed alpha
Helix 21
AC3
C
755 757Right-handed 310
Helix 22
AC4
C
760 780Right-handed alpha
Helix 23
AC5
D
488 498Right-handed alpha
Helix 24
AC6
D
502 517Right-handed alpha
Helix 25
AC7
D
524 529Right-handed alpha
Helix 26
AC8
D
529 546Right-handed alpha
Helix 27
AC9
D
552 574Right-handed alpha
Helix 28
AD1
D
577 594Right-handed alpha
Helix 29
AD2
D
598 618Right-handed alpha
Helix 30
AD3
D
620 637Right-handed alpha
Helix 31
AD4
D
642 659Right-handed alpha
Helix 32
AD5
D
662 673Right-handed alpha
Helix 33
AD6
D
674 678Right-handed 310
Helix 34
AD7
D
695 708Right-handed alpha
Helix 35
AD8
D
712 733Right-handed alpha
Helix 36
AD9
D
739 754Right-handed alpha
Helix 37
AE1
D
755 757Right-handed 310
Helix 38
AE2
D
760 779Right-handed alpha
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There are 4 sheets in PDB entry 8R0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
33 36parallel
Strand 3
A
2 6parallel
Strand 4
A
149 156anti-parallel
Strand 5
A
159 168anti-parallel
Strand 6
A
171 180anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
110 112parallel
Strand 4
A
127 131parallel
Strand 5
A
120 124anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
33 36parallel
Strand 3
B
1 6parallel
Strand 4
B
149 156anti-parallel
Strand 5
B
159 168anti-parallel
Strand 6
B
171 180anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 77first strand
Strand 2
B
80 85anti-parallel
Strand 3
B
110 112parallel
Strand 4
B
127 131parallel
Strand 5
B
120 124anti-parallel
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