Analysis of interatomic Contacts of Structural Units in PDB entry:
8R0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R0S entry

There are 3 chains in PDB entry 8R0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1ASN 475
C
 G 2 C 18
D
 G 19 A 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8R0S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 20Right-handed alpha
Helix 2
AA2
A
55 72Right-handed alpha
Helix 3
AA3
A
91 98Right-handed alpha
Helix 4
AA4
A
106 112Right-handed alpha
Helix 5
AA5
A
122 129Right-handed alpha
Helix 6
AA6
A
143 148Right-handed 310
Helix 7
AA7
A
154 159Right-handed 310
Helix 8
AA8
A
178 192Right-handed alpha
Helix 9
AA9
A
193 195Right-handed 310
Helix 10
AB1
A
211 230Right-handed alpha
Helix 11
AB2
A
234 238Right-handed 310
Helix 12
AB3
A
260 265Right-handed alpha
Helix 13
AB4
A
266 270Right-handed 310
Helix 14
AB5
A
276 288Right-handed alpha
Helix 15
AB6
A
289 291Right-handed 310
Helix 16
AB7
A
296 309Right-handed alpha
Helix 17
AB8
A
317 331Right-handed alpha
Helix 18
AB9
A
385 390Right-handed 310
Helix 19
AC1
A
391 412Right-handed alpha
Helix 20
AC2
A
424 430Right-handed alpha
Helix 21
AC3
A
438 451Right-handed alpha
Helix 22
AC4
A
464 475Right-handed alpha
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There are 6 sheets in PDB entry 8R0S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
149 150parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
165 169anti-parallel
Strand 3
A
160 162anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
101 104anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
204 209anti-parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
239 242anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
250 252anti-parallel
Strand 3
A
256 259anti-parallel
Strand 4
A
337 338anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 382first strand
Strand 2
A
356 365anti-parallel
Strand 3
A
345 352anti-parallel
Strand 4
A
415 420parallel
Strand 5
A
453 458parallel
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