Analysis of interatomic Contacts of Structural Units in PDB entry:
8R0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R0T entry

There are 4 chains in PDB entry 8R0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1246	ASP 1258
B	PRO 1259	ASP 1657
C	PRO 1658	THR 2584
F	GLY 2390	THR 2584

There are 24 helices in PDB entry 8R0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1416	1418	Right-handed 310
Helix 2	AA2	B	1419	1424	Right-handed alpha
Helix 3	AA3	B	1446	1453	Right-handed alpha
Helix 4	AA4	B	1471	1476	Right-handed alpha
Helix 5	AA5	B	1478	1491	Right-handed alpha
Helix 6	AA6	B	1495	1513	Right-handed alpha
Helix 7	AA7	B	1520	1525	Right-handed alpha
Helix 8	AA8	B	1556	1560	Right-handed 310
Helix 9	AA9	C	1838	1842	Right-handed 310
Helix 10	AB1	C	1856	1863	Right-handed alpha
Helix 11	AB2	C	1865	1879	Right-handed alpha
Helix 12	AB3	C	1882	1900	Right-handed alpha
Helix 13	AB4	C	1988	1992	Right-handed 310
Helix 14	AB5	C	2185	2193	Right-handed alpha
Helix 15	AB6	C	2213	2221	Right-handed alpha
Helix 16	AB7	C	2225	2233	Right-handed alpha
Helix 17	AB8	C	2247	2256	Right-handed alpha
Helix 18	AB9	C	2267	2279	Right-handed alpha
Helix 19	AC1	C	2322	2328	Right-handed 310
Helix 20	AC2	C	2369	2371	Right-handed 310
Helix 21	AC3	C	2462	2466	Right-handed 310
Helix 22	AC4	C	2556	2561	Right-handed alpha
Helix 23	AC5	F	2462	2466	Right-handed 310
Helix 24	AC6	F	2490	2494	Right-handed 310

There are 27 sheets in PDB entry 8R0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1268	1269	first strand
Strand 2	B	1260	1262	anti-parallel
Strand 3	A	1252	1256	anti-parallel
Strand 4	B	1378	1382	anti-parallel
Strand 5	B	1370	1373	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1277	1281	first strand
Strand 2	B	1295	1302	anti-parallel
Strand 3	B	1311	1319	anti-parallel
Strand 4	B	1322	1326	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1345	1346	first strand
Strand 2	B	1353	1355	anti-parallel
Strand 3	B	1362	1364	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1535	1540	first strand
Strand 2	B	1564	1568	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1574	1576	first strand
Strand 2	B	1579	1581	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1602	1603	first strand
Strand 2	B	1611	1615	anti-parallel
Strand 3	B	1620	1624	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1632	1633	first strand
Strand 2	B	1645	1646	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1652	1655	first strand
Strand 2	C	1774	1778	anti-parallel
Strand 3	C	1766	1769	anti-parallel
Strand 4	C	1756	1760	anti-parallel
Strand 5	C	1751	1753	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1659	1661	first strand
Strand 2	C	1667	1669	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1675	1679	first strand
Strand 2	C	1694	1699	anti-parallel
Strand 3	C	1708	1716	anti-parallel
Strand 4	C	1719	1724	anti-parallel
Strand 5	C	1732	1733	anti-parallel
Strand 6	C	1736	1737	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1921	1927	first strand
Strand 2	C	1948	1953	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1956	1959	first strand
Strand 2	C	1962	1966	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1996	1997	first strand
Strand 2	C	2003	2004	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2016	2020	first strand
Strand 2	C	2023	2027	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2062	2063	first strand
Strand 2	C	2160	2161	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2073	2077	first strand
Strand 2	C	2088	2092	anti-parallel
Strand 3	C	2095	2097	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2121	2124	first strand
Strand 2	C	2131	2134	anti-parallel
Strand 3	C	2140	2141	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2303	2306	first strand
Strand 2	C	2332	2335	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2341	2342	first strand
Strand 2	C	2345	2346	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2373	2375	first strand
Strand 2	C	2387	2390	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2411	2414	first strand
Strand 2	C	2535	2538	anti-parallel
Strand 3	C	2525	2526	anti-parallel
Strand 4	C	2516	2519	anti-parallel
Strand 5	C	2506	2510	anti-parallel
Strand 6	C	2500	2502	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2435	2438	first strand
Strand 2	C	2456	2459	anti-parallel
Strand 3	C	2469	2473	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2482	2483	first strand
Strand 2	C	2489	2491	anti-parallel
Strand 3	C	2494	2496	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2398	2400	first strand
Strand 2	F	2403	2405	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2411	2415	first strand
Strand 2	F	2534	2538	anti-parallel
Strand 3	F	2525	2528	anti-parallel
Strand 4	F	2516	2520	anti-parallel
Strand 5	F	2506	2510	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2421	2422	first strand
Strand 2	F	2428	2429	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2436	2438	first strand
Strand 2	F	2456	2458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R0T