Analysis of interatomic Contacts of Structural Units in PDB entry:
8R1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R1E entry

There are 2 chains in PDB entry 8R1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY -1PHE 592
A
 ALA 2PHE 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8R1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 17Right-handed alpha
Helix 2
AA2
B
20 27Right-handed alpha
Helix 3
AA3
B
28 33Right-handed alpha
Helix 4
AA4
B
36 54Right-handed alpha
Helix 5
AA5
B
55 57Right-handed 310
Helix 6
AA6
B
58 66Right-handed alpha
Helix 7
AA7
B
79 90Right-handed alpha
Helix 8
AA8
B
91 95Right-handed 310
Helix 9
AA9
B
98 102Right-handed 310
Helix 10
AB1
B
107 122Right-handed alpha
Helix 11
AB2
B
122 143Right-handed alpha
Helix 12
AB3
B
144 157Right-handed alpha
Helix 13
AB4
B
174 178Right-handed 310
Helix 14
AB5
B
223 228Right-handed 310
Helix 15
AB6
B
286 288Right-handed 310
Helix 16
AB7
B
289 322Right-handed alpha
Helix 17
AB8
B
340 343Right-handed 310
Helix 18
AB9
B
344 378Right-handed alpha
Helix 19
AC1
B
380 417Right-handed alpha
Helix 20
AC2
B
418 426Right-handed 310
Helix 21
AC3
B
427 439Right-handed alpha
Helix 22
AC4
B
444 455Right-handed alpha
Helix 23
AC5
B
457 461Right-handed 310
Helix 24
AC6
B
462 479Right-handed alpha
Helix 25
AC7
B
483 509Right-handed alpha
Helix 26
AC8
B
512 546Right-handed alpha
Helix 27
AC9
B
550 566Right-handed alpha
Helix 28
AD1
B
569 579Right-handed alpha
Helix 29
AD2
B
580 586Right-handed 310
Helix 30
AD3
B
588 592Right-handed 310
Helix 31
AD4
A
7 17Right-handed alpha
Helix 32
AD5
A
20 28Right-handed alpha
Helix 33
AD6
A
28 33Right-handed alpha
Helix 34
AD7
A
36 54Right-handed alpha
Helix 35
AD8
A
55 57Right-handed 310
Helix 36
AD9
A
58 66Right-handed alpha
Helix 37
AE1
A
79 90Right-handed alpha
Helix 38
AE2
A
91 95Right-handed 310
Helix 39
AE3
A
98 102Right-handed 310
Helix 40
AE4
A
107 122Right-handed alpha
Helix 41
AE5
A
122 143Right-handed alpha
Helix 42
AE6
A
144 157Right-handed alpha
Helix 43
AE7
A
174 178Right-handed 310
Helix 44
AE8
A
224 228Right-handed 310
Helix 45
AE9
A
286 288Right-handed 310
Helix 46
AF1
A
289 322Right-handed alpha
Helix 47
AF2
A
340 343Right-handed 310
Helix 48
AF3
A
344 378Right-handed alpha
Helix 49
AF4
A
380 417Right-handed alpha
Helix 50
AF5
A
418 426Right-handed 310
Helix 51
AF6
A
427 439Right-handed alpha
Helix 52
AF7
A
444 455Right-handed alpha
Helix 53
AF8
A
457 461Right-handed 310
Helix 54
AF9
A
462 479Right-handed alpha
Helix 55
AG1
A
483 509Right-handed alpha
Helix 56
AG2
A
512 546Right-handed alpha
Helix 57
AG3
A
549 566Right-handed alpha
Helix 58
AG4
A
569 579Right-handed alpha
Helix 59
AG5
A
580 585Right-handed 310
Helix 60
AG6
A
588 592Right-handed 310
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There are 8 sheets in PDB entry 8R1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
73 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
209 216parallel
Strand 3
B
229 234anti-parallel
Strand 4
B
266 279anti-parallel
Strand 5
B
190 200anti-parallel
Strand 6
B
181 184anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
209 216parallel
Strand 3
B
229 234anti-parallel
Strand 4
B
266 279anti-parallel
Strand 5
B
250 255anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
244 247anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
73 75anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 165first strand
Strand 2
A
209 216parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
266 279anti-parallel
Strand 5
A
190 200anti-parallel
Strand 6
A
181 184anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 165first strand
Strand 2
A
209 216parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
266 279anti-parallel
Strand 5
A
250 255anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
244 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il