Analysis of interatomic Contacts of Structural Units in PDB entry:
8R1G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R1G entry

There are 6 chains in PDB entry 8R1G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 123	ALA 869
B	MET 8	SER 149
C	TRP 91	LYS 292
D	LYS 123	ALA 869
E	MET 8	SER 149
F	TRP 91	LYS 292

There are108 helices in PDB entry 8R1G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	143	Right-handed alpha
Helix 2	AA2	A	146	158	Right-handed alpha
Helix 3	AA3	A	159	167	Right-handed alpha
Helix 4	AA4	A	235	247	Right-handed alpha
Helix 5	AA5	A	249	274	Right-handed alpha
Helix 6	AA6	A	275	280	Right-handed alpha
Helix 7	AA7	A	281	283	Right-handed 310
Helix 8	AA8	A	284	292	Right-handed alpha
Helix 9	AA9	A	293	297	Right-handed 310
Helix 10	AB1	A	298	304	Right-handed alpha
Helix 11	AB2	A	304	314	Right-handed alpha
Helix 12	AB3	A	317	329	Right-handed alpha
Helix 13	AB4	A	332	354	Right-handed alpha
Helix 14	AB5	A	361	364	Right-handed 310
Helix 15	AB6	A	365	386	Right-handed alpha
Helix 16	AB7	A	403	413	Right-handed alpha
Helix 17	AB8	A	426	433	Right-handed alpha
Helix 18	AB9	A	435	437	Right-handed 310
Helix 19	AC1	A	445	450	Right-handed 310
Helix 20	AC2	A	451	458	Right-handed alpha
Helix 21	AC3	A	459	469	Right-handed alpha
Helix 22	AC4	A	476	484	Right-handed 310
Helix 23	AC5	A	485	516	Right-handed alpha
Helix 24	AC6	A	531	547	Right-handed alpha
Helix 25	AC7	A	549	553	Right-handed 310
Helix 26	AC8	A	568	584	Right-handed alpha
Helix 27	AC9	A	585	588	Right-handed 310
Helix 28	AD1	A	608	625	Right-handed alpha
Helix 29	AD2	A	634	642	Right-handed alpha
Helix 30	AD3	A	647	649	Right-handed 310
Helix 31	AD4	A	650	655	Right-handed alpha
Helix 32	AD5	A	655	668	Right-handed alpha
Helix 33	AD6	A	671	677	Right-handed alpha
Helix 34	AD7	A	699	703	Right-handed 310
Helix 35	AD8	A	709	723	Right-handed alpha
Helix 36	AD9	A	726	742	Right-handed alpha
Helix 37	AE1	A	745	750	Right-handed alpha
Helix 38	AE2	A	751	761	Right-handed alpha
Helix 39	AE3	A	766	774	Right-handed alpha
Helix 40	AE4	A	784	797	Right-handed alpha
Helix 41	AE5	A	798	811	Right-handed alpha
Helix 42	AE6	A	819	823	Right-handed 310
Helix 43	AE7	A	854	869	Right-handed alpha
Helix 44	AE8	B	18	26	Right-handed alpha
Helix 45	AE9	B	45	55	Right-handed alpha
Helix 46	AF1	B	70	85	Right-handed alpha
Helix 47	AF2	B	92	100	Right-handed alpha
Helix 48	AF3	B	102	106	Right-handed 310
Helix 49	AF4	B	118	128	Right-handed alpha
Helix 50	AF5	B	143	148	Right-handed alpha
Helix 51	AF6	C	104	108	Right-handed 310
Helix 52	AF7	C	165	169	Right-handed 310
Helix 53	AF8	C	176	181	Right-handed alpha
Helix 54	AF9	C	277	292	Right-handed alpha
Helix 55	AG1	D	129	143	Right-handed alpha
Helix 56	AG2	D	146	158	Right-handed alpha
Helix 57	AG3	D	159	167	Right-handed alpha
Helix 58	AG4	D	235	247	Right-handed alpha
Helix 59	AG5	D	249	274	Right-handed alpha
Helix 60	AG6	D	275	280	Right-handed alpha
Helix 61	AG7	D	281	283	Right-handed 310
Helix 62	AG8	D	284	292	Right-handed alpha
Helix 63	AG9	D	293	297	Right-handed 310
Helix 64	AH1	D	298	304	Right-handed alpha
Helix 65	AH2	D	304	314	Right-handed alpha
Helix 66	AH3	D	317	329	Right-handed alpha
Helix 67	AH4	D	332	354	Right-handed alpha
Helix 68	AH5	D	361	364	Right-handed 310
Helix 69	AH6	D	365	386	Right-handed alpha
Helix 70	AH7	D	403	413	Right-handed alpha
Helix 71	AH8	D	426	433	Right-handed alpha
Helix 72	AH9	D	435	437	Right-handed 310
Helix 73	AI1	D	445	450	Right-handed 310
Helix 74	AI2	D	451	458	Right-handed alpha
Helix 75	AI3	D	459	469	Right-handed alpha
Helix 76	AI4	D	476	484	Right-handed 310
Helix 77	AI5	D	485	516	Right-handed alpha
Helix 78	AI6	D	531	547	Right-handed alpha
Helix 79	AI7	D	549	553	Right-handed 310
Helix 80	AI8	D	568	584	Right-handed alpha
Helix 81	AI9	D	585	588	Right-handed 310
Helix 82	AJ1	D	608	625	Right-handed alpha
Helix 83	AJ2	D	634	642	Right-handed alpha
Helix 84	AJ3	D	647	649	Right-handed 310
Helix 85	AJ4	D	650	655	Right-handed alpha
Helix 86	AJ5	D	655	668	Right-handed alpha
Helix 87	AJ6	D	671	677	Right-handed alpha
Helix 88	AJ7	D	699	703	Right-handed 310
Helix 89	AJ8	D	709	723	Right-handed alpha
Helix 90	AJ9	D	726	742	Right-handed alpha
Helix 91	AK1	D	745	750	Right-handed alpha
Helix 92	AK2	D	751	761	Right-handed alpha
Helix 93	AK3	D	766	774	Right-handed alpha
Helix 94	AK4	D	784	797	Right-handed alpha
Helix 95	AK5	D	798	811	Right-handed alpha
Helix 96	AK6	D	819	823	Right-handed 310
Helix 97	AK7	D	854	869	Right-handed alpha
Helix 98	AK8	E	18	26	Right-handed alpha
Helix 99	AK9	E	45	55	Right-handed alpha
Helix 100	AL1	E	70	85	Right-handed alpha
Helix 101	AL2	E	92	100	Right-handed alpha
Helix 102	AL3	E	102	106	Right-handed 310
Helix 103	AL4	E	118	128	Right-handed alpha
Helix 104	AL5	E	143	148	Right-handed alpha
Helix 105	AL6	F	104	108	Right-handed 310
Helix 106	AL7	F	165	169	Right-handed 310
Helix 107	AL8	F	176	181	Right-handed alpha
Helix 108	AL9	F	277	292	Right-handed alpha

There are 18 sheets in PDB entry 8R1G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	439	441	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	527	first strand
Strand 2	A	554	559	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	593	first strand
Strand 2	A	598	601	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	685	first strand
Strand 2	A	691	695	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	777	first strand
Strand 2	A	826	829	parallel
Strand 3	A	846	849	parallel
Strand 4	A	839	841	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	65	68	parallel
Strand 3	B	60	62	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	91	first strand
Strand 2	B	131	135	anti-parallel
Strand 3	B	138	141	anti-parallel
Strand 4	B	109	110	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	113	first strand
Strand 2	C	141	146	anti-parallel
Strand 3	C	230	236	anti-parallel
Strand 4	C	195	198	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	132	135	anti-parallel
Strand 3	C	264	274	parallel
Strand 4	C	251	258	anti-parallel
Strand 5	C	156	163	anti-parallel
Strand 6	C	214	219	anti-parallel
Strand 7	C	204	207	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	388	first strand
Strand 2	D	439	441	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	522	527	first strand
Strand 2	D	554	559	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	593	first strand
Strand 2	D	598	601	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	685	first strand
Strand 2	D	691	695	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	775	777	first strand
Strand 2	D	826	829	parallel
Strand 3	D	846	849	parallel
Strand 4	D	839	841	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	37	first strand
Strand 2	E	65	68	parallel
Strand 3	E	60	62	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	91	first strand
Strand 2	E	131	135	anti-parallel
Strand 3	E	138	141	anti-parallel
Strand 4	E	109	110	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	113	first strand
Strand 2	F	141	146	anti-parallel
Strand 3	F	230	236	anti-parallel
Strand 4	F	195	198	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	127	first strand
Strand 2	F	132	135	anti-parallel
Strand 3	F	264	274	parallel
Strand 4	F	251	258	anti-parallel
Strand 5	F	156	163	anti-parallel
Strand 6	F	214	219	anti-parallel
Strand 7	F	204	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R1G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R1G