Analysis of interatomic Contacts of Structural Units in PDB entry:
8R2U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R2U entry

There are 3 chains in PDB entry 8R2U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	ALA 606
B	ILE 5	ALA 606
C	ILE 5	GLU 94

There are112 helices in PDB entry 8R2U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	33	Right-handed alpha
Helix 2	AA2	A	56	66	Right-handed alpha
Helix 3	AA3	A	68	76	Right-handed alpha
Helix 4	AA4	A	116	131	Right-handed alpha
Helix 5	AA5	A	149	155	Right-handed alpha
Helix 6	AA6	A	193	199	Right-handed alpha
Helix 7	AA7	A	256	261	Right-handed 310
Helix 8	AA8	A	269	273	Right-handed 310
Helix 9	AA9	A	274	286	Right-handed alpha
Helix 10	AB1	A	323	325	Right-handed 310
Helix 11	AB2	A	330	334	Right-handed 310
Helix 12	AB3	A	337	356	Right-handed alpha
Helix 13	AB4	A	360	363	Right-handed 310
Helix 14	AB5	A	364	386	Right-handed alpha
Helix 15	AB6	A	387	390	Right-handed 310
Helix 16	AB7	A	398	402	Right-handed 310
Helix 17	AB8	A	403	420	Right-handed alpha
Helix 18	AB9	A	435	440	Right-handed 310
Helix 19	AC1	A	465	468	Right-handed 310
Helix 20	AC2	A	485	501	Right-handed alpha
Helix 21	AC3	A	504	509	Right-handed alpha
Helix 22	AC4	A	513	516	Right-handed 310
Helix 23	AC5	A	527	531	Right-handed 310
Helix 24	AC6	A	532	536	Right-handed 310
Helix 25	AC7	A	537	541	Right-handed 310
Helix 26	AC8	A	543	545	Right-handed 310
Helix 27	AC9	A	561	567	Right-handed alpha
Helix 28	AD1	A	592	602	Right-handed alpha
Helix 29	AD2	B	20	33	Right-handed alpha
Helix 30	AD3	B	56	66	Right-handed alpha
Helix 31	AD4	B	68	76	Right-handed alpha
Helix 32	AD5	B	116	131	Right-handed alpha
Helix 33	AD6	B	149	155	Right-handed alpha
Helix 34	AD7	B	193	199	Right-handed alpha
Helix 35	AD8	B	256	261	Right-handed alpha
Helix 36	AD9	B	269	273	Right-handed 310
Helix 37	AE1	B	274	286	Right-handed alpha
Helix 38	AE2	B	323	325	Right-handed 310
Helix 39	AE3	B	330	334	Right-handed 310
Helix 40	AE4	B	337	356	Right-handed alpha
Helix 41	AE5	B	360	363	Right-handed 310
Helix 42	AE6	B	364	386	Right-handed alpha
Helix 43	AE7	B	387	390	Right-handed 310
Helix 44	AE8	B	398	402	Right-handed 310
Helix 45	AE9	B	403	420	Right-handed alpha
Helix 46	AF1	B	435	440	Right-handed 310
Helix 47	AF2	B	465	468	Right-handed 310
Helix 48	AF3	B	485	501	Right-handed alpha
Helix 49	AF4	B	504	509	Right-handed alpha
Helix 50	AF5	B	513	516	Right-handed 310
Helix 51	AF6	B	527	531	Right-handed 310
Helix 52	AF7	B	532	536	Right-handed 310
Helix 53	AF8	B	537	541	Right-handed 310
Helix 54	AF9	B	543	545	Right-handed 310
Helix 55	AG1	B	561	567	Right-handed alpha
Helix 56	AG2	B	592	602	Right-handed alpha
Helix 57	AG3	C	20	33	Right-handed alpha
Helix 58	AG4	C	56	66	Right-handed alpha
Helix 59	AG5	C	68	76	Right-handed alpha
Helix 60	AG6	C	116	131	Right-handed alpha
Helix 61	AG7	C	149	155	Right-handed alpha
Helix 62	AG8	C	193	199	Right-handed alpha
Helix 63	AG9	C	256	261	Right-handed alpha
Helix 64	AH1	C	269	273	Right-handed 310
Helix 65	AH2	C	274	286	Right-handed alpha
Helix 66	AH3	C	323	325	Right-handed 310
Helix 67	AH4	C	330	334	Right-handed 310
Helix 68	AH5	C	337	356	Right-handed alpha
Helix 69	AH6	C	360	363	Right-handed 310
Helix 70	AH7	C	364	386	Right-handed alpha
Helix 71	AH8	C	387	390	Right-handed 310
Helix 72	AH9	C	398	402	Right-handed 310
Helix 73	AI1	C	403	420	Right-handed alpha
Helix 74	AI2	C	435	440	Right-handed 310
Helix 75	AI3	C	465	468	Right-handed 310
Helix 76	AI4	C	485	501	Right-handed alpha
Helix 77	AI5	C	504	509	Right-handed alpha
Helix 78	AI6	C	513	516	Right-handed 310
Helix 79	AI7	C	527	531	Right-handed 310
Helix 80	AI8	C	532	536	Right-handed 310
Helix 81	AI9	C	537	541	Right-handed 310
Helix 82	AJ1	C	543	545	Right-handed 310
Helix 83	AJ2	C	561	567	Right-handed alpha
Helix 84	AJ3	C	592	602	Right-handed alpha
Helix 85	AJ4	D	20	33	Right-handed alpha
Helix 86	AJ5	D	56	66	Right-handed alpha
Helix 87	AJ6	D	68	76	Right-handed alpha
Helix 88	AJ7	D	116	131	Right-handed alpha
Helix 89	AJ8	D	149	155	Right-handed alpha
Helix 90	AJ9	D	193	199	Right-handed alpha
Helix 91	AK1	D	256	261	Right-handed 310
Helix 92	AK2	D	269	273	Right-handed 310
Helix 93	AK3	D	274	286	Right-handed alpha
Helix 94	AK4	D	323	325	Right-handed 310
Helix 95	AK5	D	330	334	Right-handed 310
Helix 96	AK6	D	337	356	Right-handed alpha
Helix 97	AK7	D	360	363	Right-handed 310
Helix 98	AK8	D	364	386	Right-handed alpha
Helix 99	AK9	D	387	390	Right-handed 310
Helix 100	AL1	D	398	402	Right-handed 310
Helix 101	AL2	D	403	420	Right-handed alpha
Helix 102	AL3	D	435	440	Right-handed 310
Helix 103	AL4	D	465	468	Right-handed 310
Helix 104	AL5	D	485	501	Right-handed alpha
Helix 105	AL6	D	504	509	Right-handed alpha
Helix 106	AL7	D	513	516	Right-handed 310
Helix 107	AL8	D	527	531	Right-handed 310
Helix 108	AL9	D	532	536	Right-handed 310
Helix 109	AM1	D	537	541	Right-handed 310
Helix 110	AM2	D	543	545	Right-handed 310
Helix 111	AM3	D	561	567	Right-handed alpha
Helix 112	AM4	D	592	602	Right-handed alpha

There are 28 sheets in PDB entry 8R2U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	37	40	parallel
Strand 3	A	8	17	parallel
Strand 4	A	177	187	parallel
Strand 5	A	161	167	anti-parallel
Strand 6	A	139	146	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	37	40	parallel
Strand 3	A	8	17	parallel
Strand 4	A	177	187	parallel
Strand 5	A	319	321	parallel
Strand 6	A	314	315	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	112	114	anti-parallel
Strand 3	A	77	79	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	81	87	anti-parallel
Strand 3	A	229	233	parallel
Strand 4	A	238	243	anti-parallel
Strand 5	A	249	254	anti-parallel
Strand 6	A	210	217	anti-parallel
Strand 7	A	299	305	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	308	310	anti-parallel
Strand 3	A	327	328	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	292	293	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	A	452	455	anti-parallel
Strand 3	A	547	549	anti-parallel
Strand 4	A	518	524	parallel
Strand 5	A	474	481	parallel
Strand 6	A	574	578	anti-parallel
Strand 7	A	584	588	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	8	17	parallel
Strand 3	B	177	187	parallel
Strand 4	B	161	167	anti-parallel
Strand 5	B	139	146	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	8	17	parallel
Strand 3	B	177	187	parallel
Strand 4	B	319	321	parallel
Strand 5	B	314	315	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	112	114	anti-parallel
Strand 3	B	77	79	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	81	87	anti-parallel
Strand 3	B	229	233	parallel
Strand 4	B	238	243	anti-parallel
Strand 5	B	249	255	anti-parallel
Strand 6	B	210	217	anti-parallel
Strand 7	B	299	305	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	308	310	anti-parallel
Strand 3	B	327	328	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	292	293	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	452	455	anti-parallel
Strand 3	B	547	549	anti-parallel
Strand 4	B	518	524	parallel
Strand 5	B	474	481	parallel
Strand 6	B	574	578	anti-parallel
Strand 7	B	584	588	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	136	first strand
Strand 2	C	37	40	parallel
Strand 3	C	8	17	parallel
Strand 4	C	177	187	parallel
Strand 5	C	161	167	anti-parallel
Strand 6	C	139	146	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	136	first strand
Strand 2	C	37	40	parallel
Strand 3	C	8	17	parallel
Strand 4	C	177	187	parallel
Strand 5	C	319	321	parallel
Strand 6	C	314	315	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	112	114	anti-parallel
Strand 3	C	77	79	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	100	first strand
Strand 2	C	81	87	anti-parallel
Strand 3	C	229	233	parallel
Strand 4	C	238	243	anti-parallel
Strand 5	C	249	255	anti-parallel
Strand 6	C	210	217	anti-parallel
Strand 7	C	299	305	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	308	310	anti-parallel
Strand 3	C	327	328	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	292	293	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	463	first strand
Strand 2	C	452	455	anti-parallel
Strand 3	C	547	549	anti-parallel
Strand 4	C	518	524	parallel
Strand 5	C	474	481	parallel
Strand 6	C	574	578	anti-parallel
Strand 7	C	584	588	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	136	first strand
Strand 2	D	37	40	parallel
Strand 3	D	8	17	parallel
Strand 4	D	177	187	parallel
Strand 5	D	161	167	anti-parallel
Strand 6	D	139	146	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	136	first strand
Strand 2	D	37	40	parallel
Strand 3	D	8	17	parallel
Strand 4	D	177	187	parallel
Strand 5	D	319	321	parallel
Strand 6	D	314	315	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	112	114	anti-parallel
Strand 3	D	77	79	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	100	first strand
Strand 2	D	81	87	anti-parallel
Strand 3	D	229	233	parallel
Strand 4	D	238	243	anti-parallel
Strand 5	D	249	255	anti-parallel
Strand 6	D	210	217	anti-parallel
Strand 7	D	299	305	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	308	310	anti-parallel
Strand 3	D	327	328	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	292	293	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	463	first strand
Strand 2	D	452	455	anti-parallel
Strand 3	D	547	549	anti-parallel
Strand 4	D	518	524	parallel
Strand 5	D	474	481	parallel
Strand 6	D	574	578	anti-parallel
Strand 7	D	584	588	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R2U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R2U