Analysis of interatomic Contacts of Structural Units in PDB entry:
8R2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R2V entry

There are 2 chains in PDB entry 8R2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ARG 322
B
 GLU 4ARG 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8R2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 38Right-handed alpha
Helix 2
AA2
A
42 64Right-handed alpha
Helix 3
AA3
A
66 83Right-handed alpha
Helix 4
AA4
A
89 98Right-handed alpha
Helix 5
AA5
A
99 109Right-handed alpha
Helix 6
AA6
A
111 115Right-handed 310
Helix 7
AA7
A
177 181Right-handed 310
Helix 8
AA8
A
217 226Right-handed alpha
Helix 9
AA9
A
259 263Right-handed 310
Helix 10
AB1
A
269 271Right-handed 310
Helix 11
AB2
A
281 288Right-handed alpha
Helix 12
AB3
A
307 322Right-handed alpha
Helix 13
AB4
B
25 38Right-handed alpha
Helix 14
AB5
B
42 64Right-handed alpha
Helix 15
AB6
B
66 83Right-handed alpha
Helix 16
AB7
B
89 98Right-handed alpha
Helix 17
AB8
B
99 109Right-handed alpha
Helix 18
AB9
B
111 115Right-handed 310
Helix 19
AC1
B
177 181Right-handed 310
Helix 20
AC2
B
217 226Right-handed alpha
Helix 21
AC3
B
259 263Right-handed 310
Helix 22
AC4
B
269 271Right-handed 310
Helix 23
AC5
B
281 288Right-handed alpha
Helix 24
AC6
B
307 322Right-handed alpha
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There are 8 sheets in PDB entry 8R2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 206first strand
Strand 2
A
146 155anti-parallel
Strand 3
A
296 300parallel
Strand 4
A
277 279anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 206first strand
Strand 2
A
146 155anti-parallel
Strand 3
A
303 305parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
165 169anti-parallel
Strand 3
A
236 241anti-parallel
Strand 4
A
248 254anti-parallel
Strand 5
A
273 274parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
231 232anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 206first strand
Strand 2
B
146 155anti-parallel
Strand 3
B
296 300parallel
Strand 4
B
277 279anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 206first strand
Strand 2
B
146 155anti-parallel
Strand 3
B
303 305parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 194first strand
Strand 2
B
165 169anti-parallel
Strand 3
B
236 241anti-parallel
Strand 4
B
248 254anti-parallel
Strand 5
B
273 274parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
231 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il