Analysis of interatomic Contacts of Structural Units in PDB entry:
8R3E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R3E entry

There are 6 chains in PDB entry 8R3E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	LEU 393
B	LYS 1	LYS 394
C	LYS 1	PHE 396
D	LYS 1	LEU 393
E	LYS 1	LEU 393
F	LYS 1	LYS 394

There are111 helices in PDB entry 8R3E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	53	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	82	89	Right-handed alpha
Helix 5	AA5	A	90	95	Right-handed alpha
Helix 6	AA6	A	131	141	Right-handed alpha
Helix 7	AA7	A	153	164	Right-handed alpha
Helix 8	AA8	A	185	201	Right-handed alpha
Helix 9	AA9	A	209	219	Right-handed alpha
Helix 10	AB1	A	228	232	Right-handed 310
Helix 11	AB2	A	272	283	Right-handed alpha
Helix 12	AB3	A	286	297	Right-handed alpha
Helix 13	AB4	A	304	312	Right-handed alpha
Helix 14	AB5	A	314	326	Right-handed alpha
Helix 15	AB6	A	335	353	Right-handed alpha
Helix 16	AB7	A	356	369	Right-handed alpha
Helix 17	AB8	A	371	393	Right-handed alpha
Helix 18	AB9	B	16	32	Right-handed alpha
Helix 19	AC1	B	42	53	Right-handed alpha
Helix 20	AC2	B	64	74	Right-handed alpha
Helix 21	AC3	B	82	89	Right-handed alpha
Helix 22	AC4	B	90	95	Right-handed alpha
Helix 23	AC5	B	131	141	Right-handed alpha
Helix 24	AC6	B	153	163	Right-handed alpha
Helix 25	AC7	B	185	201	Right-handed alpha
Helix 26	AC8	B	209	219	Right-handed alpha
Helix 27	AC9	B	228	235	Right-handed 310
Helix 28	AD1	B	249	253	Right-handed 310
Helix 29	AD2	B	272	283	Right-handed alpha
Helix 30	AD3	B	286	297	Right-handed alpha
Helix 31	AD4	B	304	312	Right-handed alpha
Helix 32	AD5	B	314	327	Right-handed alpha
Helix 33	AD6	B	335	353	Right-handed alpha
Helix 34	AD7	B	356	370	Right-handed alpha
Helix 35	AD8	B	370	394	Right-handed alpha
Helix 36	AD9	C	16	32	Right-handed alpha
Helix 37	AE1	C	42	53	Right-handed alpha
Helix 38	AE2	C	64	74	Right-handed alpha
Helix 39	AE3	C	82	89	Right-handed alpha
Helix 40	AE4	C	90	95	Right-handed alpha
Helix 41	AE5	C	131	141	Right-handed alpha
Helix 42	AE6	C	153	163	Right-handed alpha
Helix 43	AE7	C	185	201	Right-handed alpha
Helix 44	AE8	C	209	219	Right-handed alpha
Helix 45	AE9	C	228	230	Right-handed 310
Helix 46	AF1	C	231	239	Right-handed alpha
Helix 47	AF2	C	272	283	Right-handed alpha
Helix 48	AF3	C	286	297	Right-handed alpha
Helix 49	AF4	C	304	312	Right-handed alpha
Helix 50	AF5	C	314	327	Right-handed alpha
Helix 51	AF6	C	335	353	Right-handed alpha
Helix 52	AF7	C	356	369	Right-handed alpha
Helix 53	AF8	C	374	396	Right-handed alpha
Helix 54	AF9	D	16	32	Right-handed alpha
Helix 55	AG1	D	42	53	Right-handed alpha
Helix 56	AG2	D	64	74	Right-handed alpha
Helix 57	AG3	D	82	89	Right-handed alpha
Helix 58	AG4	D	90	95	Right-handed alpha
Helix 59	AG5	D	131	141	Right-handed alpha
Helix 60	AG6	D	153	166	Right-handed alpha
Helix 61	AG7	D	185	201	Right-handed alpha
Helix 62	AG8	D	209	219	Right-handed alpha
Helix 63	AG9	D	228	230	Right-handed 310
Helix 64	AH1	D	231	236	Right-handed alpha
Helix 65	AH2	D	272	283	Right-handed alpha
Helix 66	AH3	D	286	297	Right-handed alpha
Helix 67	AH4	D	304	312	Right-handed alpha
Helix 68	AH5	D	314	327	Right-handed alpha
Helix 69	AH6	D	335	353	Right-handed alpha
Helix 70	AH7	D	356	369	Right-handed alpha
Helix 71	AH8	D	371	393	Right-handed alpha
Helix 72	AH9	E	16	32	Right-handed alpha
Helix 73	AI1	E	42	53	Right-handed alpha
Helix 74	AI2	E	64	74	Right-handed alpha
Helix 75	AI3	E	82	89	Right-handed alpha
Helix 76	AI4	E	90	95	Right-handed alpha
Helix 77	AI5	E	128	130	Right-handed 310
Helix 78	AI6	E	131	141	Right-handed alpha
Helix 79	AI7	E	153	163	Right-handed alpha
Helix 80	AI8	E	185	201	Right-handed alpha
Helix 81	AI9	E	209	219	Right-handed alpha
Helix 82	AJ1	E	228	230	Right-handed 310
Helix 83	AJ2	E	231	236	Right-handed alpha
Helix 84	AJ3	E	249	253	Right-handed 310
Helix 85	AJ4	E	272	283	Right-handed alpha
Helix 86	AJ5	E	286	297	Right-handed alpha
Helix 87	AJ6	E	304	312	Right-handed alpha
Helix 88	AJ7	E	314	327	Right-handed alpha
Helix 89	AJ8	E	335	353	Right-handed alpha
Helix 90	AJ9	E	356	370	Right-handed alpha
Helix 91	AK1	E	370	391	Right-handed alpha
Helix 92	AK2	F	16	32	Right-handed alpha
Helix 93	AK3	F	42	53	Right-handed alpha
Helix 94	AK4	F	64	74	Right-handed alpha
Helix 95	AK5	F	82	89	Right-handed alpha
Helix 96	AK6	F	90	96	Right-handed 310
Helix 97	AK7	F	131	140	Right-handed alpha
Helix 98	AK8	F	141	143	Right-handed 310
Helix 99	AK9	F	153	163	Right-handed alpha
Helix 100	AL1	F	185	201	Right-handed alpha
Helix 101	AL2	F	209	219	Right-handed alpha
Helix 102	AL3	F	228	230	Right-handed 310
Helix 103	AL4	F	231	236	Right-handed alpha
Helix 104	AL5	F	249	253	Right-handed 310
Helix 105	AL6	F	272	283	Right-handed alpha
Helix 106	AL7	F	286	297	Right-handed alpha
Helix 107	AL8	F	304	312	Right-handed alpha
Helix 108	AL9	F	314	327	Right-handed alpha
Helix 109	AM1	F	335	353	Right-handed alpha
Helix 110	AM2	F	356	369	Right-handed alpha
Helix 111	AM3	F	374	394	Right-handed alpha

There are 35 sheets in PDB entry 8R3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	262	266	anti-parallel
Strand 5	A	105	110	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	226	parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	176	177	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	328	329	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	262	267	anti-parallel
Strand 5	B	76	77	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	262	267	anti-parallel
Strand 5	B	105	110	anti-parallel
Strand 6	B	301	302	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	115	118	anti-parallel
Strand 3	B	242	245	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	176	177	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	328	329	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	262	267	anti-parallel
Strand 5	C	76	77	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	262	267	anti-parallel
Strand 5	C	105	110	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	102	103	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	222	227	parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	242	245	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	175	177	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	328	329	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	7	10	parallel
Strand 3	D	59	63	parallel
Strand 4	D	262	267	anti-parallel
Strand 5	D	76	77	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	7	10	parallel
Strand 3	D	59	63	parallel
Strand 4	D	262	267	anti-parallel
Strand 5	D	105	110	anti-parallel
Strand 6	D	301	302	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	115	118	anti-parallel
Strand 3	D	242	245	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	176	177	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	328	329	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	7	10	parallel
Strand 3	E	59	63	parallel
Strand 4	E	262	266	anti-parallel
Strand 5	E	105	107	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	102	103	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	110	first strand
Strand 2	E	301	302	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	226	first strand
Strand 2	E	115	118	anti-parallel
Strand 3	E	242	245	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	171	first strand
Strand 2	E	176	177	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	259	first strand
Strand 2	E	328	329	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	7	10	parallel
Strand 3	F	59	63	parallel
Strand 4	F	262	267	anti-parallel
Strand 5	F	76	77	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	7	10	parallel
Strand 3	F	59	63	parallel
Strand 4	F	262	267	anti-parallel
Strand 5	F	105	110	anti-parallel
Strand 6	F	301	302	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	102	103	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	147	first strand
Strand 2	F	222	227	parallel
Strand 3	F	114	118	anti-parallel
Strand 4	F	242	245	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	172	first strand
Strand 2	F	175	177	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	259	first strand
Strand 2	F	328	329	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R3E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R3E