Analysis of interatomic Contacts of Structural Units in PDB entry:
8R3P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R3P entry

There are 4 chains in PDB entry 8R3P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 672
B	MET 1	GLU 666
C	MET 1	LEU 668
D	MET 1	LEU 668

There are131 helices in PDB entry 8R3P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	25	Right-handed alpha
Helix 2	AA2	A	29	46	Right-handed alpha
Helix 3	AA3	A	50	54	Right-handed 310
Helix 4	AA4	A	67	69	Right-handed 310
Helix 5	AA5	A	70	82	Right-handed alpha
Helix 6	AA6	A	86	92	Right-handed alpha
Helix 7	AA7	A	120	141	Right-handed alpha
Helix 8	AA8	A	158	163	Right-handed alpha
Helix 9	AA9	A	163	176	Right-handed alpha
Helix 10	AB1	A	195	199	Right-handed 310
Helix 11	AB2	A	203	211	Right-handed alpha
Helix 12	AB3	A	223	237	Right-handed alpha
Helix 13	AB4	A	260	265	Right-handed alpha
Helix 14	AB5	A	268	280	Right-handed alpha
Helix 15	AB6	A	289	300	Right-handed alpha
Helix 16	AB7	A	300	322	Right-handed alpha
Helix 17	AB8	A	322	335	Right-handed alpha
Helix 18	AB9	A	356	371	Right-handed alpha
Helix 19	AC1	A	381	386	Right-handed alpha
Helix 20	AC2	A	410	425	Right-handed alpha
Helix 21	AC3	A	437	452	Right-handed alpha
Helix 22	AC4	A	463	467	Right-handed 310
Helix 23	AC5	A	470	474	Right-handed 310
Helix 24	AC6	A	477	484	Right-handed alpha
Helix 25	AC7	A	495	508	Right-handed alpha
Helix 26	AC8	A	528	537	Right-handed alpha
Helix 27	AC9	A	538	540	Right-handed 310
Helix 28	AD1	A	562	576	Right-handed alpha
Helix 29	AD2	A	587	594	Right-handed alpha
Helix 30	AD3	A	595	603	Right-handed alpha
Helix 31	AD4	A	621	626	Right-handed alpha
Helix 32	AD5	A	642	650	Right-handed alpha
Helix 33	AD6	A	653	667	Right-handed alpha
Helix 34	AD7	B	3	25	Right-handed alpha
Helix 35	AD8	B	29	46	Right-handed alpha
Helix 36	AD9	B	50	54	Right-handed 310
Helix 37	AE1	B	67	69	Right-handed 310
Helix 38	AE2	B	70	82	Right-handed alpha
Helix 39	AE3	B	86	92	Right-handed alpha
Helix 40	AE4	B	120	141	Right-handed alpha
Helix 41	AE5	B	158	163	Right-handed alpha
Helix 42	AE6	B	163	176	Right-handed alpha
Helix 43	AE7	B	195	199	Right-handed 310
Helix 44	AE8	B	203	212	Right-handed alpha
Helix 45	AE9	B	223	237	Right-handed alpha
Helix 46	AF1	B	260	265	Right-handed alpha
Helix 47	AF2	B	268	280	Right-handed alpha
Helix 48	AF3	B	289	300	Right-handed alpha
Helix 49	AF4	B	300	322	Right-handed alpha
Helix 50	AF5	B	322	334	Right-handed alpha
Helix 51	AF6	B	356	371	Right-handed alpha
Helix 52	AF7	B	381	386	Right-handed alpha
Helix 53	AF8	B	410	425	Right-handed alpha
Helix 54	AF9	B	437	452	Right-handed alpha
Helix 55	AG1	B	463	467	Right-handed 310
Helix 56	AG2	B	470	474	Right-handed 310
Helix 57	AG3	B	477	484	Right-handed alpha
Helix 58	AG4	B	495	509	Right-handed alpha
Helix 59	AG5	B	528	537	Right-handed alpha
Helix 60	AG6	B	538	540	Right-handed 310
Helix 61	AG7	B	562	576	Right-handed alpha
Helix 62	AG8	B	587	593	Right-handed alpha
Helix 63	AG9	B	595	603	Right-handed alpha
Helix 64	AH1	B	621	626	Right-handed alpha
Helix 65	AH2	B	642	650	Right-handed alpha
Helix 66	AH3	B	653	666	Right-handed alpha
Helix 67	AH4	C	3	25	Right-handed alpha
Helix 68	AH5	C	29	46	Right-handed alpha
Helix 69	AH6	C	67	69	Right-handed 310
Helix 70	AH7	C	70	82	Right-handed alpha
Helix 71	AH8	C	86	92	Right-handed alpha
Helix 72	AH9	C	120	141	Right-handed alpha
Helix 73	AI1	C	157	163	Right-handed alpha
Helix 74	AI2	C	163	176	Right-handed alpha
Helix 75	AI3	C	195	199	Right-handed 310
Helix 76	AI4	C	203	211	Right-handed alpha
Helix 77	AI5	C	223	237	Right-handed alpha
Helix 78	AI6	C	260	265	Right-handed alpha
Helix 79	AI7	C	268	280	Right-handed alpha
Helix 80	AI8	C	289	300	Right-handed alpha
Helix 81	AI9	C	300	322	Right-handed alpha
Helix 82	AJ1	C	322	334	Right-handed alpha
Helix 83	AJ2	C	356	371	Right-handed alpha
Helix 84	AJ3	C	381	386	Right-handed alpha
Helix 85	AJ4	C	396	400	Right-handed 310
Helix 86	AJ5	C	410	425	Right-handed alpha
Helix 87	AJ6	C	437	452	Right-handed alpha
Helix 88	AJ7	C	463	467	Right-handed 310
Helix 89	AJ8	C	470	474	Right-handed 310
Helix 90	AJ9	C	477	485	Right-handed alpha
Helix 91	AK1	C	495	509	Right-handed alpha
Helix 92	AK2	C	528	538	Right-handed alpha
Helix 93	AK3	C	562	576	Right-handed alpha
Helix 94	AK4	C	587	593	Right-handed alpha
Helix 95	AK5	C	595	603	Right-handed alpha
Helix 96	AK6	C	621	626	Right-handed alpha
Helix 97	AK7	C	642	650	Right-handed alpha
Helix 98	AK8	C	653	668	Right-handed alpha
Helix 99	AK9	D	3	25	Right-handed alpha
Helix 100	AL1	D	29	46	Right-handed alpha
Helix 101	AL2	D	50	54	Right-handed 310
Helix 102	AL3	D	67	69	Right-handed 310
Helix 103	AL4	D	70	82	Right-handed alpha
Helix 104	AL5	D	86	92	Right-handed alpha
Helix 105	AL6	D	120	141	Right-handed alpha
Helix 106	AL7	D	158	163	Right-handed alpha
Helix 107	AL8	D	163	177	Right-handed alpha
Helix 108	AL9	D	195	199	Right-handed 310
Helix 109	AM1	D	203	211	Right-handed alpha
Helix 110	AM2	D	223	237	Right-handed alpha
Helix 111	AM3	D	259	263	Right-handed 310
Helix 112	AM4	D	268	280	Right-handed alpha
Helix 113	AM5	D	289	300	Right-handed alpha
Helix 114	AM6	D	300	322	Right-handed alpha
Helix 115	AM7	D	322	335	Right-handed alpha
Helix 116	AM8	D	356	371	Right-handed alpha
Helix 117	AM9	D	381	386	Right-handed alpha
Helix 118	AN1	D	410	425	Right-handed alpha
Helix 119	AN2	D	437	452	Right-handed alpha
Helix 120	AN3	D	463	467	Right-handed 310
Helix 121	AN4	D	470	474	Right-handed 310
Helix 122	AN5	D	477	485	Right-handed alpha
Helix 123	AN6	D	495	509	Right-handed alpha
Helix 124	AN7	D	528	537	Right-handed alpha
Helix 125	AN8	D	538	540	Right-handed 310
Helix 126	AN9	D	562	576	Right-handed alpha
Helix 127	AO1	D	587	593	Right-handed alpha
Helix 128	AO2	D	595	603	Right-handed alpha
Helix 129	AO3	D	621	626	Right-handed alpha
Helix 130	AO4	D	642	650	Right-handed alpha
Helix 131	AO5	D	653	664	Right-handed alpha

There are 16 sheets in PDB entry 8R3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	152	157	parallel
Strand 3	A	181	186	parallel
Strand 4	A	242	246	parallel
Strand 5	A	214	218	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	522	524	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	374	378	parallel
Strand 3	A	428	434	parallel
Strand 4	A	456	460	parallel
Strand 5	A	514	517	parallel
Strand 6	A	489	491	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	545	first strand
Strand 2	A	580	584	anti-parallel
Strand 3	A	554	558	parallel
Strand 4	A	610	613	parallel
Strand 5	A	630	632	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	65	first strand
Strand 2	B	152	157	parallel
Strand 3	B	181	187	parallel
Strand 4	B	242	247	parallel
Strand 5	B	214	218	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	522	524	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	374	378	parallel
Strand 3	B	428	434	parallel
Strand 4	B	456	460	parallel
Strand 5	B	514	517	parallel
Strand 6	B	489	491	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	545	first strand
Strand 2	B	580	584	anti-parallel
Strand 3	B	554	558	parallel
Strand 4	B	610	613	parallel
Strand 5	B	630	632	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	65	first strand
Strand 2	C	152	156	parallel
Strand 3	C	181	187	parallel
Strand 4	C	242	247	parallel
Strand 5	C	214	218	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	355	first strand
Strand 2	C	522	524	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	406	first strand
Strand 2	C	374	378	parallel
Strand 3	C	428	434	parallel
Strand 4	C	456	460	parallel
Strand 5	C	514	517	parallel
Strand 6	C	489	491	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	545	first strand
Strand 2	C	580	584	anti-parallel
Strand 3	C	554	558	parallel
Strand 4	C	610	613	parallel
Strand 5	C	630	632	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	65	first strand
Strand 2	D	152	157	parallel
Strand 3	D	181	187	parallel
Strand 4	D	242	247	parallel
Strand 5	D	214	218	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	355	first strand
Strand 2	D	522	524	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	406	first strand
Strand 2	D	374	378	parallel
Strand 3	D	428	434	parallel
Strand 4	D	456	460	parallel
Strand 5	D	514	517	parallel
Strand 6	D	489	491	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	545	first strand
Strand 2	D	580	584	anti-parallel
Strand 3	D	554	558	parallel
Strand 4	D	610	613	parallel
Strand 5	D	630	632	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R3P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R3P