Analysis of interatomic Contacts of Structural Units in PDB entry:
8R3R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R3R entry

There are 4 chains in PDB entry 8R3R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 658
B	MET 1	LYS 658
C	SER 2	LYS 658
D	MET 1	LYS 658

There are136 helices in PDB entry 8R3R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	21	Right-handed alpha
Helix 2	AA2	A	24	42	Right-handed alpha
Helix 3	AA3	A	62	64	Right-handed 310
Helix 4	AA4	A	65	77	Right-handed alpha
Helix 5	AA5	A	82	87	Right-handed alpha
Helix 6	AA6	A	116	137	Right-handed alpha
Helix 7	AA7	A	153	159	Right-handed alpha
Helix 8	AA8	A	159	173	Right-handed alpha
Helix 9	AA9	A	193	195	Right-handed 310
Helix 10	AB1	A	199	207	Right-handed alpha
Helix 11	AB2	A	219	232	Right-handed alpha
Helix 12	AB3	A	255	259	Right-handed 310
Helix 13	AB4	A	264	276	Right-handed alpha
Helix 14	AB5	A	285	296	Right-handed alpha
Helix 15	AB6	A	296	318	Right-handed alpha
Helix 16	AB7	A	318	331	Right-handed alpha
Helix 17	AB8	A	338	342	Right-handed 310
Helix 18	AB9	A	353	368	Right-handed alpha
Helix 19	AC1	A	378	383	Right-handed alpha
Helix 20	AC2	A	407	422	Right-handed alpha
Helix 21	AC3	A	433	437	Right-handed 310
Helix 22	AC4	A	438	449	Right-handed alpha
Helix 23	AC5	A	460	464	Right-handed 310
Helix 24	AC6	A	467	471	Right-handed 310
Helix 25	AC7	A	474	481	Right-handed alpha
Helix 26	AC8	A	492	506	Right-handed alpha
Helix 27	AC9	A	527	534	Right-handed 310
Helix 28	AD1	A	554	569	Right-handed alpha
Helix 29	AD2	A	580	585	Right-handed alpha
Helix 30	AD3	A	588	596	Right-handed alpha
Helix 31	AD4	A	611	613	Right-handed 310
Helix 32	AD5	A	614	619	Right-handed alpha
Helix 33	AD6	A	635	644	Right-handed alpha
Helix 34	AD7	A	646	656	Right-handed alpha
Helix 35	AD8	B	2	21	Right-handed alpha
Helix 36	AD9	B	25	42	Right-handed alpha
Helix 37	AE1	B	62	64	Right-handed 310
Helix 38	AE2	B	65	77	Right-handed alpha
Helix 39	AE3	B	82	87	Right-handed alpha
Helix 40	AE4	B	116	137	Right-handed alpha
Helix 41	AE5	B	153	159	Right-handed alpha
Helix 42	AE6	B	159	173	Right-handed alpha
Helix 43	AE7	B	191	195	Right-handed 310
Helix 44	AE8	B	199	207	Right-handed alpha
Helix 45	AE9	B	219	233	Right-handed alpha
Helix 46	AF1	B	255	259	Right-handed 310
Helix 47	AF2	B	264	275	Right-handed alpha
Helix 48	AF3	B	285	296	Right-handed alpha
Helix 49	AF4	B	296	318	Right-handed alpha
Helix 50	AF5	B	321	330	Right-handed alpha
Helix 51	AF6	B	338	342	Right-handed 310
Helix 52	AF7	B	353	368	Right-handed alpha
Helix 53	AF8	B	378	383	Right-handed alpha
Helix 54	AF9	B	407	422	Right-handed alpha
Helix 55	AG1	B	433	437	Right-handed 310
Helix 56	AG2	B	438	449	Right-handed alpha
Helix 57	AG3	B	460	464	Right-handed 310
Helix 58	AG4	B	467	471	Right-handed 310
Helix 59	AG5	B	474	481	Right-handed alpha
Helix 60	AG6	B	492	506	Right-handed alpha
Helix 61	AG7	B	527	534	Right-handed 310
Helix 62	AG8	B	554	569	Right-handed alpha
Helix 63	AG9	B	580	585	Right-handed alpha
Helix 64	AH1	B	588	596	Right-handed alpha
Helix 65	AH2	B	611	613	Right-handed 310
Helix 66	AH3	B	614	619	Right-handed alpha
Helix 67	AH4	B	635	643	Right-handed alpha
Helix 68	AH5	B	646	656	Right-handed alpha
Helix 69	AH6	C	3	21	Right-handed alpha
Helix 70	AH7	C	24	42	Right-handed alpha
Helix 71	AH8	C	62	64	Right-handed 310
Helix 72	AH9	C	65	77	Right-handed alpha
Helix 73	AI1	C	82	87	Right-handed alpha
Helix 74	AI2	C	116	137	Right-handed alpha
Helix 75	AI3	C	153	159	Right-handed alpha
Helix 76	AI4	C	159	173	Right-handed alpha
Helix 77	AI5	C	193	195	Right-handed 310
Helix 78	AI6	C	199	207	Right-handed alpha
Helix 79	AI7	C	219	232	Right-handed alpha
Helix 80	AI8	C	255	259	Right-handed 310
Helix 81	AI9	C	264	276	Right-handed alpha
Helix 82	AJ1	C	285	296	Right-handed alpha
Helix 83	AJ2	C	296	318	Right-handed alpha
Helix 84	AJ3	C	321	330	Right-handed alpha
Helix 85	AJ4	C	338	342	Right-handed 310
Helix 86	AJ5	C	352	368	Right-handed alpha
Helix 87	AJ6	C	378	383	Right-handed alpha
Helix 88	AJ7	C	407	422	Right-handed alpha
Helix 89	AJ8	C	433	437	Right-handed 310
Helix 90	AJ9	C	438	449	Right-handed alpha
Helix 91	AK1	C	460	464	Right-handed 310
Helix 92	AK2	C	467	471	Right-handed 310
Helix 93	AK3	C	474	481	Right-handed alpha
Helix 94	AK4	C	492	506	Right-handed alpha
Helix 95	AK5	C	530	534	Right-handed 310
Helix 96	AK6	C	554	568	Right-handed alpha
Helix 97	AK7	C	580	585	Right-handed alpha
Helix 98	AK8	C	588	596	Right-handed alpha
Helix 99	AK9	C	611	613	Right-handed 310
Helix 100	AL1	C	614	619	Right-handed alpha
Helix 101	AL2	C	635	643	Right-handed alpha
Helix 102	AL3	C	646	656	Right-handed alpha
Helix 103	AL4	D	2	21	Right-handed alpha
Helix 104	AL5	D	24	42	Right-handed alpha
Helix 105	AL6	D	62	64	Right-handed 310
Helix 106	AL7	D	65	76	Right-handed alpha
Helix 107	AL8	D	82	87	Right-handed alpha
Helix 108	AL9	D	116	137	Right-handed alpha
Helix 109	AM1	D	153	159	Right-handed alpha
Helix 110	AM2	D	159	173	Right-handed alpha
Helix 111	AM3	D	193	195	Right-handed 310
Helix 112	AM4	D	199	207	Right-handed alpha
Helix 113	AM5	D	219	233	Right-handed alpha
Helix 114	AM6	D	255	259	Right-handed 310
Helix 115	AM7	D	264	276	Right-handed alpha
Helix 116	AM8	D	285	296	Right-handed alpha
Helix 117	AM9	D	296	318	Right-handed alpha
Helix 118	AN1	D	321	330	Right-handed alpha
Helix 119	AN2	D	338	342	Right-handed 310
Helix 120	AN3	D	353	368	Right-handed alpha
Helix 121	AN4	D	378	383	Right-handed alpha
Helix 122	AN5	D	407	422	Right-handed alpha
Helix 123	AN6	D	433	437	Right-handed 310
Helix 124	AN7	D	438	449	Right-handed alpha
Helix 125	AN8	D	460	464	Right-handed 310
Helix 126	AN9	D	467	471	Right-handed 310
Helix 127	AO1	D	474	481	Right-handed alpha
Helix 128	AO2	D	492	506	Right-handed alpha
Helix 129	AO3	D	528	534	Right-handed 310
Helix 130	AO4	D	554	569	Right-handed alpha
Helix 131	AO5	D	580	585	Right-handed alpha
Helix 132	AO6	D	588	596	Right-handed alpha
Helix 133	AO7	D	611	613	Right-handed 310
Helix 134	AO8	D	614	619	Right-handed alpha
Helix 135	AO9	D	635	643	Right-handed alpha
Helix 136	AP1	D	646	656	Right-handed alpha

There are 19 sheets in PDB entry 8R3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	148	152	parallel
Strand 3	A	177	183	parallel
Strand 4	A	237	242	parallel
Strand 5	A	210	214	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	190	191	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	519	521	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	371	375	parallel
Strand 3	A	425	431	parallel
Strand 4	A	453	457	parallel
Strand 5	A	511	515	parallel
Strand 6	A	486	488	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	540	first strand
Strand 2	A	573	577	anti-parallel
Strand 3	A	547	551	parallel
Strand 4	A	603	606	parallel
Strand 5	A	623	625	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	148	152	parallel
Strand 3	B	177	183	parallel
Strand 4	B	237	242	parallel
Strand 5	B	210	214	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	519	521	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	403	first strand
Strand 2	B	371	375	parallel
Strand 3	B	425	431	parallel
Strand 4	B	453	457	parallel
Strand 5	B	511	515	parallel
Strand 6	B	486	488	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	540	first strand
Strand 2	B	573	577	anti-parallel
Strand 3	B	547	551	parallel
Strand 4	B	603	606	parallel
Strand 5	B	623	625	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	148	152	parallel
Strand 3	C	177	183	parallel
Strand 4	C	237	242	parallel
Strand 5	C	210	214	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	190	191	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	520	521	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	403	first strand
Strand 2	C	371	375	parallel
Strand 3	C	425	431	parallel
Strand 4	C	453	457	parallel
Strand 5	C	511	515	parallel
Strand 6	C	486	488	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	540	first strand
Strand 2	C	573	577	anti-parallel
Strand 3	C	547	551	parallel
Strand 4	C	603	606	parallel
Strand 5	C	623	625	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	148	152	parallel
Strand 3	D	177	183	parallel
Strand 4	D	237	242	parallel
Strand 5	D	210	214	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	190	191	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	352	first strand
Strand 2	D	519	521	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	403	first strand
Strand 2	D	371	375	parallel
Strand 3	D	425	431	parallel
Strand 4	D	453	457	parallel
Strand 5	D	511	515	parallel
Strand 6	D	486	488	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	536	540	first strand
Strand 2	D	573	577	anti-parallel
Strand 3	D	547	551	parallel
Strand 4	D	603	606	parallel
Strand 5	D	623	625	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R3R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R3R