Analysis of interatomic Contacts of Structural Units in PDB entry:
8R41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R41 entry

There are 2 chains in PDB entry 8R41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 22THR 383
B
 TYR 22THR 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8R41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
72 83Right-handed alpha
Helix 5
AA5
A
103 112Right-handed alpha
Helix 6
AA6
A
112 131Right-handed alpha
Helix 7
AA7
A
142 166Right-handed alpha
Helix 8
AA8
A
181 189Right-handed alpha
Helix 9
AA9
A
190 198Right-handed alpha
Helix 10
AB1
A
226 230Right-handed 310
Helix 11
AB2
A
236 247Right-handed alpha
Helix 12
AB3
A
250 252Right-handed 310
Helix 13
AB4
A
296 304Right-handed alpha
Helix 14
AB5
A
330 344Right-handed alpha
Helix 15
AB6
A
353 357Right-handed 310
Helix 16
AB7
A
370 381Right-handed alpha
Helix 17
AB8
B
31 35Right-handed 310
Helix 18
AB9
B
36 40Right-handed 310
Helix 19
AC1
B
42 46Right-handed 310
Helix 20
AC2
B
72 82Right-handed alpha
Helix 21
AC3
B
83 86Right-handed 310
Helix 22
AC4
B
103 112Right-handed alpha
Helix 23
AC5
B
112 131Right-handed alpha
Helix 24
AC6
B
146 165Right-handed alpha
Helix 25
AC7
B
181 189Right-handed alpha
Helix 26
AC8
B
190 198Right-handed alpha
Helix 27
AC9
B
226 230Right-handed 310
Helix 28
AD1
B
236 247Right-handed alpha
Helix 29
AD2
B
250 252Right-handed 310
Helix 30
AD3
B
296 303Right-handed alpha
Helix 31
AD4
B
330 344Right-handed alpha
Helix 32
AD5
B
353 357Right-handed 310
Helix 33
AD6
B
370 381Right-handed alpha
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There are 6 sheets in PDB entry 8R41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
91 98parallel
Strand 4
A
134 139parallel
Strand 5
A
173 179parallel
Strand 6
A
200 204parallel
Strand 7
A
254 259parallel
Strand 8
A
348 352parallel
Strand 9
A
23 29parallel
Strand 10
A
53 62parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
261 267anti-parallel
Strand 3
A
293 295anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
261 267anti-parallel
Strand 3
A
324 327anti-parallel
Strand 4
A
316 321anti-parallel
Strand 5
A
307 311anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
53 62anti-parallel
Strand 3
B
91 98parallel
Strand 4
B
134 139parallel
Strand 5
B
173 179parallel
Strand 6
B
200 204parallel
Strand 7
B
254 259parallel
Strand 8
B
348 352parallel
Strand 9
B
23 29parallel
Strand 10
B
53 62parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 281first strand
Strand 2
B
261 267anti-parallel
Strand 3
B
293 295anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 281first strand
Strand 2
B
261 267anti-parallel
Strand 3
B
324 327anti-parallel
Strand 4
B
316 321anti-parallel
Strand 5
B
307 311anti-parallel
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