Analysis of interatomic Contacts of Structural Units in PDB entry:
8R48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R48 entry

There are 2 chains in PDB entry 8R48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23MET 761
A
 PHE 763ALA 916
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8R48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 40Right-handed alpha
Helix 2
AA2
A
49 80Right-handed alpha
Helix 3
AA3
A
96 104Right-handed alpha
Helix 4
AA4
A
106 117Right-handed alpha
Helix 5
AA5
A
120 126Right-handed alpha
Helix 6
AA6
A
136 152Right-handed alpha
Helix 7
AA7
A
252 256Right-handed 310
Helix 8
AA8
A
257 263Right-handed alpha
Helix 9
AA9
A
265 270Right-handed alpha
Helix 10
AB1
A
270 278Right-handed alpha
Helix 11
AB2
A
279 281Right-handed 310
Helix 12
AB3
A
289 320Right-handed alpha
Helix 13
AB4
A
324 326Right-handed 310
Helix 14
AB5
A
327 331Right-handed alpha
Helix 15
AB6
A
339 342Right-handed 310
Helix 16
AB7
A
343 355Right-handed alpha
Helix 17
AB8
A
359 370Right-handed alpha
Helix 18
AB9
A
388 395Right-handed alpha
Helix 19
AC1
A
395 416Right-handed alpha
Helix 20
AC2
A
422 433Right-handed alpha
Helix 21
AC3
A
518 526Right-handed alpha
Helix 22
AC4
A
533 543Right-handed alpha
Helix 23
AC5
A
545 552Right-handed alpha
Helix 24
AC6
A
564 569Right-handed alpha
Helix 25
AC7
A
573 585Right-handed alpha
Helix 26
AC8
A
587 591Right-handed 310
Helix 27
AC9
A
592 603Right-handed 310
Helix 28
AD1
A
605 632Right-handed alpha
Helix 29
AD2
A
653 670Right-handed alpha
Helix 30
AD3
A
672 680Right-handed alpha
Helix 31
AD4
A
695 714Right-handed alpha
Helix 32
AD5
A
718 720Right-handed 310
Helix 33
AD6
A
731 739Right-handed alpha
Helix 34
AD7
A
740 742Right-handed 310
Helix 35
AD8
A
758 766Right-handed alpha
Helix 36
AD9
A
776 786Right-handed alpha
Helix 37
AE1
A
796 798Right-handed 310
Helix 38
AE2
A
799 809Right-handed alpha
Helix 39
AE3
A
815 827Right-handed alpha
Helix 40
AE4
A
835 841Right-handed alpha
Helix 41
AE5
A
855 876Right-handed alpha
Helix 42
AE6
A
876 890Right-handed alpha
Helix 43
AE7
A
891 894Right-handed 310
Helix 44
AE8
A
895 907Right-handed alpha
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There are 5 sheets in PDB entry 8R48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 204first strand
Strand 2
A
222 234anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
156 161parallel
Strand 5
A
83 87parallel
Strand 6
A
332 337parallel
Strand 7
A
371 374parallel
Strand 8
A
528 531parallel
Strand 9
A
556 558parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
176 180anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
216 219anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
515 517anti-parallel
Strand 3
A
435 436anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
722 727first strand
Strand 2
A
683 688parallel
Strand 3
A
640 645parallel
Strand 4
A
744 747parallel
Strand 5
A
769 772parallel
Strand 6
A
790 792parallel
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