Analysis of interatomic Contacts of Structural Units in PDB entry:
8R4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R4D entry

There are 2 chains in PDB entry 8R4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 447PHE 891
B
 GLN 13GLN 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8R4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
465 470Right-handed alpha
Helix 2
AA2
A
503 507Right-handed 310
Helix 3
AA3
A
541 545Right-handed 310
Helix 4
AA4
A
548 558Right-handed alpha
Helix 5
AA5
A
580 588Right-handed alpha
Helix 6
AA6
A
608 618Right-handed alpha
Helix 7
AA7
A
629 647Right-handed alpha
Helix 8
AA8
A
650 661Right-handed alpha
Helix 9
AA9
A
665 678Right-handed alpha
Helix 10
AB1
A
697 710Right-handed alpha
Helix 11
AB2
A
723 728Right-handed alpha
Helix 12
AB3
A
749 763Right-handed alpha
Helix 13
AB4
A
809 814Right-handed alpha
Helix 14
AB5
A
872 881Right-handed alpha
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There are 5 sheets in PDB entry 8R4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 493first strand
Strand 2
A
510 515anti-parallel
Strand 3
A
452 458parallel
Strand 4
A
534 540parallel
Strand 5
A
564 568parallel
Strand 6
A
595 596parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
830 834first strand
Strand 2
A
842 848anti-parallel
Strand 3
A
853 857anti-parallel
Strand 4
A
799 802anti-parallel
Strand 5
A
888 891anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 23first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
71 76anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
97 102anti-parallel
Strand 4
B
114 117anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
57 58anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il