Analysis of interatomic Contacts of Structural Units in PDB entry:
8R4F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R4F entry

There are 5 chains in PDB entry 8R4F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	SER 512
B	ALA 1	SER 512
C	ALA 1	SER 512
D	ALA 1	SER 512
E	ALA 1	SER 512

There are 49 helices in PDB entry 8R4F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	85	Right-handed 310
Helix 2	AA2	A	120	127	Right-handed alpha
Helix 3	AA3	A	137	142	Right-handed alpha
Helix 4	AA4	A	174	181	Right-handed alpha
Helix 5	AA5	A	329	345	Right-handed alpha
Helix 6	AA6	A	346	350	Right-handed 310
Helix 7	AA7	A	398	401	Right-handed 310
Helix 8	AA8	A	459	463	Right-handed 310
Helix 9	AA9	A	486	490	Right-handed 310
Helix 10	AB1	A	497	503	Right-handed alpha
Helix 11	AB2	B	81	85	Right-handed 310
Helix 12	AB3	B	120	127	Right-handed alpha
Helix 13	AB4	B	137	142	Right-handed alpha
Helix 14	AB5	B	174	181	Right-handed alpha
Helix 15	AB6	B	329	345	Right-handed alpha
Helix 16	AB7	B	346	350	Right-handed 310
Helix 17	AB8	B	458	462	Right-handed 310
Helix 18	AB9	B	486	490	Right-handed 310
Helix 19	AC1	B	497	503	Right-handed alpha
Helix 20	AC2	C	81	85	Right-handed 310
Helix 21	AC3	C	120	127	Right-handed alpha
Helix 22	AC4	C	137	142	Right-handed alpha
Helix 23	AC5	C	174	181	Right-handed alpha
Helix 24	AC6	C	329	345	Right-handed alpha
Helix 25	AC7	C	346	350	Right-handed 310
Helix 26	AC8	C	398	401	Right-handed 310
Helix 27	AC9	C	459	463	Right-handed 310
Helix 28	AD1	C	486	490	Right-handed 310
Helix 29	AD2	C	497	503	Right-handed alpha
Helix 30	AD3	D	81	85	Right-handed 310
Helix 31	AD4	D	120	127	Right-handed alpha
Helix 32	AD5	D	137	142	Right-handed alpha
Helix 33	AD6	D	174	181	Right-handed alpha
Helix 34	AD7	D	329	345	Right-handed alpha
Helix 35	AD8	D	346	350	Right-handed 310
Helix 36	AD9	D	398	401	Right-handed 310
Helix 37	AE1	D	458	462	Right-handed 310
Helix 38	AE2	D	486	490	Right-handed 310
Helix 39	AE3	D	497	503	Right-handed alpha
Helix 40	AE4	E	81	85	Right-handed 310
Helix 41	AE5	E	120	127	Right-handed alpha
Helix 42	AE6	E	137	142	Right-handed alpha
Helix 43	AE7	E	174	181	Right-handed alpha
Helix 44	AE8	E	329	345	Right-handed alpha
Helix 45	AE9	E	346	350	Right-handed 310
Helix 46	AF1	E	398	401	Right-handed 310
Helix 47	AF2	E	458	463	Right-handed 310
Helix 48	AF3	E	486	490	Right-handed 310
Helix 49	AF4	E	497	503	Right-handed alpha

There are 30 sheets in PDB entry 8R4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	50	54	parallel
Strand 3	A	131	136	parallel
Strand 4	A	109	114	anti-parallel
Strand 5	A	74	76	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	42	first strand
Strand 2	A	19	29	anti-parallel
Strand 3	A	58	66	parallel
Strand 4	A	97	103	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	186	189	anti-parallel
Strand 3	A	153	161	anti-parallel
Strand 4	A	203	210	parallel
Strand 5	A	253	259	anti-parallel
Strand 6	A	227	232	anti-parallel
Strand 7	A	235	243	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	201	first strand
Strand 2	A	287	298	parallel
Strand 3	A	266	270	anti-parallel
Strand 4	A	217	221	anti-parallel
Strand 5	A	246	248	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	405	first strand
Strand 2	A	320	328	anti-parallel
Strand 3	A	424	430	parallel
Strand 4	A	474	480	anti-parallel
Strand 5	A	448	451	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	506	512	parallel
Strand 3	A	491	495	anti-parallel
Strand 4	A	437	442	anti-parallel
Strand 5	A	467	471	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	50	54	parallel
Strand 3	B	131	136	parallel
Strand 4	B	109	114	anti-parallel
Strand 5	B	74	76	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	42	first strand
Strand 2	B	19	29	anti-parallel
Strand 3	B	58	64	parallel
Strand 4	B	97	103	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	186	189	anti-parallel
Strand 3	B	153	161	anti-parallel
Strand 4	B	203	210	parallel
Strand 5	B	253	259	anti-parallel
Strand 6	B	227	232	anti-parallel
Strand 7	B	235	243	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	201	first strand
Strand 2	B	287	298	parallel
Strand 3	B	266	270	anti-parallel
Strand 4	B	217	221	anti-parallel
Strand 5	B	246	248	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	405	first strand
Strand 2	B	320	328	anti-parallel
Strand 3	B	424	430	parallel
Strand 4	B	474	480	anti-parallel
Strand 5	B	448	451	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	506	512	parallel
Strand 3	B	491	495	anti-parallel
Strand 4	B	437	442	anti-parallel
Strand 5	B	467	471	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	50	54	parallel
Strand 3	C	132	136	parallel
Strand 4	C	109	114	anti-parallel
Strand 5	C	74	76	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	42	first strand
Strand 2	C	19	29	anti-parallel
Strand 3	C	58	65	parallel
Strand 4	C	97	103	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	186	189	anti-parallel
Strand 3	C	153	161	anti-parallel
Strand 4	C	203	210	parallel
Strand 5	C	253	259	anti-parallel
Strand 6	C	227	232	anti-parallel
Strand 7	C	235	243	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	201	first strand
Strand 2	C	287	298	parallel
Strand 3	C	266	270	anti-parallel
Strand 4	C	217	221	anti-parallel
Strand 5	C	246	248	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	405	first strand
Strand 2	C	320	328	anti-parallel
Strand 3	C	424	430	parallel
Strand 4	C	474	480	anti-parallel
Strand 5	C	448	451	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	420	first strand
Strand 2	C	506	512	parallel
Strand 3	C	491	495	anti-parallel
Strand 4	C	437	442	anti-parallel
Strand 5	C	467	471	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	50	54	parallel
Strand 3	D	132	136	parallel
Strand 4	D	109	114	anti-parallel
Strand 5	D	74	76	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	42	first strand
Strand 2	D	19	29	anti-parallel
Strand 3	D	58	66	parallel
Strand 4	D	97	103	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	D	186	189	anti-parallel
Strand 3	D	153	161	anti-parallel
Strand 4	D	203	210	parallel
Strand 5	D	253	259	anti-parallel
Strand 6	D	227	232	anti-parallel
Strand 7	D	235	243	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	201	first strand
Strand 2	D	287	298	parallel
Strand 3	D	266	270	anti-parallel
Strand 4	D	217	221	anti-parallel
Strand 5	D	246	248	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	405	first strand
Strand 2	D	320	328	anti-parallel
Strand 3	D	424	430	parallel
Strand 4	D	474	480	anti-parallel
Strand 5	D	448	451	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	506	512	parallel
Strand 3	D	491	495	anti-parallel
Strand 4	D	437	442	anti-parallel
Strand 5	D	467	471	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	50	54	parallel
Strand 3	E	132	136	parallel
Strand 4	E	109	114	anti-parallel
Strand 5	E	74	76	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	42	first strand
Strand 2	E	19	30	anti-parallel
Strand 3	E	58	66	parallel
Strand 4	E	97	103	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	193	first strand
Strand 2	E	186	189	anti-parallel
Strand 3	E	153	161	anti-parallel
Strand 4	E	203	210	parallel
Strand 5	E	253	259	anti-parallel
Strand 6	E	227	232	anti-parallel
Strand 7	E	235	243	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	201	first strand
Strand 2	E	287	298	parallel
Strand 3	E	266	270	anti-parallel
Strand 4	E	217	221	anti-parallel
Strand 5	E	246	248	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	403	405	first strand
Strand 2	E	320	328	anti-parallel
Strand 3	E	424	430	parallel
Strand 4	E	474	480	anti-parallel
Strand 5	E	448	451	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	420	first strand
Strand 2	E	506	512	parallel
Strand 3	E	491	495	anti-parallel
Strand 4	E	437	442	anti-parallel
Strand 5	E	467	471	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R4F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R4F