Analysis of interatomic Contacts of Structural Units in PDB entry:
8R4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R4H entry

There are 2 chains in PDB entry 8R4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30SER 541
B
 ALA 30SER 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8R4H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
149 157Right-handed alpha
Helix 2
AA2
A
166 172Right-handed alpha
Helix 3
AA3
A
203 209Right-handed alpha
Helix 4
AA4
A
526 532Right-handed alpha
Helix 5
AA5
B
149 157Right-handed alpha
Helix 6
AA6
B
166 172Right-handed alpha
Helix 7
AA7
B
203 209Right-handed alpha
Helix 8
AA8
B
526 532Right-handed alpha
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There are 12 sheets in PDB entry 8R4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
79 83parallel
Strand 3
A
160 165parallel
Strand 4
A
139 143anti-parallel
Strand 5
A
103 105anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 71first strand
Strand 2
A
48 59anti-parallel
Strand 3
A
87 94parallel
Strand 4
A
126 132anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
182 190anti-parallel
Strand 3
A
232 239parallel
Strand 4
A
282 288anti-parallel
Strand 5
A
256 261anti-parallel
Strand 6
A
264 272anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 230first strand
Strand 2
A
316 327parallel
Strand 3
A
295 299anti-parallel
Strand 4
A
246 250anti-parallel
Strand 5
A
275 277anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 434first strand
Strand 2
A
349 358anti-parallel
Strand 3
A
453 459parallel
Strand 4
A
503 509anti-parallel
Strand 5
A
477 480anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 449first strand
Strand 2
A
535 541parallel
Strand 3
A
520 524anti-parallel
Strand 4
A
467 471anti-parallel
Strand 5
A
496 499anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
79 83parallel
Strand 3
B
160 165parallel
Strand 4
B
139 143anti-parallel
Strand 5
B
103 105anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 71first strand
Strand 2
B
48 59anti-parallel
Strand 3
B
87 94parallel
Strand 4
B
126 132anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
182 190anti-parallel
Strand 3
B
232 239parallel
Strand 4
B
282 288anti-parallel
Strand 5
B
256 261anti-parallel
Strand 6
B
264 272anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 230first strand
Strand 2
B
316 327parallel
Strand 3
B
295 299anti-parallel
Strand 4
B
246 250anti-parallel
Strand 5
B
275 277anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 434first strand
Strand 2
B
349 358anti-parallel
Strand 3
B
453 459parallel
Strand 4
B
503 509anti-parallel
Strand 5
B
477 480anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 449first strand
Strand 2
B
535 541parallel
Strand 3
B
520 524anti-parallel
Strand 4
B
467 471anti-parallel
Strand 5
B
496 499anti-parallel
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