Analysis of interatomic Contacts of Structural Units in PDB entry:
8R4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R4J entry

There are 6 chains in PDB entry 8R4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23MET 761
A
 PHE 763ALA 916
B
 ALA 23MET 761
B
 PHE 763ALA 916
C
 ALA 23MET 761
C
 PHE 763ALA 916
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are123 helices in PDB entry 8R4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 40Right-handed alpha
Helix 2
AA2
A
49 80Right-handed alpha
Helix 3
AA3
A
96 105Right-handed alpha
Helix 4
AA4
A
106 117Right-handed alpha
Helix 5
AA5
A
120 128Right-handed alpha
Helix 6
AA6
A
136 152Right-handed alpha
Helix 7
AA7
A
252 256Right-handed 310
Helix 8
AA8
A
257 264Right-handed alpha
Helix 9
AA9
A
265 279Right-handed alpha
Helix 10
AB1
A
289 320Right-handed alpha
Helix 11
AB2
A
324 330Right-handed 310
Helix 12
AB3
A
339 342Right-handed 310
Helix 13
AB4
A
343 355Right-handed alpha
Helix 14
AB5
A
359 369Right-handed alpha
Helix 15
AB6
A
388 395Right-handed alpha
Helix 16
AB7
A
397 411Right-handed alpha
Helix 17
AB8
A
422 433Right-handed alpha
Helix 18
AB9
A
518 526Right-handed alpha
Helix 19
AC1
A
533 543Right-handed alpha
Helix 20
AC2
A
545 552Right-handed alpha
Helix 21
AC3
A
564 569Right-handed alpha
Helix 22
AC4
A
573 585Right-handed alpha
Helix 23
AC5
A
587 591Right-handed 310
Helix 24
AC6
A
592 603Right-handed 310
Helix 25
AC7
A
605 632Right-handed alpha
Helix 26
AC8
A
649 652Right-handed 310
Helix 27
AC9
A
653 670Right-handed alpha
Helix 28
AD1
A
672 680Right-handed alpha
Helix 29
AD2
A
695 714Right-handed alpha
Helix 30
AD3
A
731 739Right-handed alpha
Helix 31
AD4
A
740 742Right-handed 310
Helix 32
AD5
A
758 766Right-handed alpha
Helix 33
AD6
A
776 786Right-handed alpha
Helix 34
AD7
A
787 790Right-handed 310
Helix 35
AD8
A
798 809Right-handed alpha
Helix 36
AD9
A
817 827Right-handed alpha
Helix 37
AE1
A
835 841Right-handed alpha
Helix 38
AE2
A
855 876Right-handed alpha
Helix 39
AE3
A
876 890Right-handed alpha
Helix 40
AE4
A
891 894Right-handed 310
Helix 41
AE5
A
895 907Right-handed alpha
Helix 42
AE6
B
25 40Right-handed alpha
Helix 43
AE7
B
49 80Right-handed alpha
Helix 44
AE8
B
96 105Right-handed alpha
Helix 45
AE9
B
106 117Right-handed alpha
Helix 46
AF1
B
120 128Right-handed alpha
Helix 47
AF2
B
136 152Right-handed alpha
Helix 48
AF3
B
252 256Right-handed 310
Helix 49
AF4
B
257 264Right-handed alpha
Helix 50
AF5
B
265 279Right-handed alpha
Helix 51
AF6
B
289 320Right-handed alpha
Helix 52
AF7
B
324 330Right-handed 310
Helix 53
AF8
B
339 342Right-handed 310
Helix 54
AF9
B
343 355Right-handed alpha
Helix 55
AG1
B
359 369Right-handed alpha
Helix 56
AG2
B
388 395Right-handed alpha
Helix 57
AG3
B
397 411Right-handed alpha
Helix 58
AG4
B
422 433Right-handed alpha
Helix 59
AG5
B
518 526Right-handed alpha
Helix 60
AG6
B
533 543Right-handed alpha
Helix 61
AG7
B
545 552Right-handed alpha
Helix 62
AG8
B
564 569Right-handed alpha
Helix 63
AG9
B
573 585Right-handed alpha
Helix 64
AH1
B
587 591Right-handed 310
Helix 65
AH2
B
592 603Right-handed 310
Helix 66
AH3
B
605 632Right-handed alpha
Helix 67
AH4
B
649 652Right-handed 310
Helix 68
AH5
B
653 670Right-handed alpha
Helix 69
AH6
B
672 680Right-handed alpha
Helix 70
AH7
B
695 714Right-handed alpha
Helix 71
AH8
B
731 739Right-handed alpha
Helix 72
AH9
B
740 742Right-handed 310
Helix 73
AI1
B
758 766Right-handed alpha
Helix 74
AI2
B
776 786Right-handed alpha
Helix 75
AI3
B
787 790Right-handed 310
Helix 76
AI4
B
798 809Right-handed alpha
Helix 77
AI5
B
817 827Right-handed alpha
Helix 78
AI6
B
835 841Right-handed alpha
Helix 79
AI7
B
855 876Right-handed alpha
Helix 80
AI8
B
876 890Right-handed alpha
Helix 81
AI9
B
891 894Right-handed 310
Helix 82
AJ1
B
895 907Right-handed alpha
Helix 83
AJ2
C
25 40Right-handed alpha
Helix 84
AJ3
C
49 80Right-handed alpha
Helix 85
AJ4
C
96 105Right-handed alpha
Helix 86
AJ5
C
106 117Right-handed alpha
Helix 87
AJ6
C
120 126Right-handed alpha
Helix 88
AJ7
C
136 152Right-handed alpha
Helix 89
AJ8
C
252 256Right-handed 310
Helix 90
AJ9
C
257 264Right-handed alpha
Helix 91
AK1
C
265 279Right-handed alpha
Helix 92
AK2
C
289 320Right-handed alpha
Helix 93
AK3
C
324 330Right-handed 310
Helix 94
AK4
C
339 342Right-handed 310
Helix 95
AK5
C
343 355Right-handed alpha
Helix 96
AK6
C
359 369Right-handed alpha
Helix 97
AK7
C
388 395Right-handed alpha
Helix 98
AK8
C
397 411Right-handed alpha
Helix 99
AK9
C
422 433Right-handed alpha
Helix 100
AL1
C
518 526Right-handed alpha
Helix 101
AL2
C
533 543Right-handed alpha
Helix 102
AL3
C
545 552Right-handed alpha
Helix 103
AL4
C
564 569Right-handed alpha
Helix 104
AL5
C
573 585Right-handed alpha
Helix 105
AL6
C
587 591Right-handed 310
Helix 106
AL7
C
592 603Right-handed 310
Helix 107
AL8
C
605 632Right-handed alpha
Helix 108
AL9
C
649 652Right-handed 310
Helix 109
AM1
C
653 670Right-handed alpha
Helix 110
AM2
C
672 680Right-handed alpha
Helix 111
AM3
C
695 714Right-handed alpha
Helix 112
AM4
C
731 739Right-handed alpha
Helix 113
AM5
C
740 742Right-handed 310
Helix 114
AM6
C
758 766Right-handed alpha
Helix 115
AM7
C
776 786Right-handed alpha
Helix 116
AM8
C
787 790Right-handed 310
Helix 117
AM9
C
798 809Right-handed alpha
Helix 118
AN1
C
817 827Right-handed alpha
Helix 119
AN2
C
835 841Right-handed alpha
Helix 120
AN3
C
855 876Right-handed alpha
Helix 121
AN4
C
876 890Right-handed alpha
Helix 122
AN5
C
891 894Right-handed 310
Helix 123
AN6
C
895 907Right-handed alpha
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There are 15 sheets in PDB entry 8R4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 204first strand
Strand 2
A
222 234anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
156 161parallel
Strand 5
A
83 87parallel
Strand 6
A
332 337parallel
Strand 7
A
371 374parallel
Strand 8
A
529 531parallel
Strand 9
A
556 558parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
177 180anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
216 219anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
515 517anti-parallel
Strand 3
A
435 436anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
722 727first strand
Strand 2
A
683 688parallel
Strand 3
A
640 645parallel
Strand 4
A
744 747parallel
Strand 5
A
769 772parallel
Strand 6
A
791 792parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 204first strand
Strand 2
B
222 234anti-parallel
Strand 3
B
241 250anti-parallel
Strand 4
B
156 161parallel
Strand 5
B
83 87parallel
Strand 6
B
332 337parallel
Strand 7
B
371 374parallel
Strand 8
B
529 531parallel
Strand 9
B
556 558parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 172first strand
Strand 2
B
177 180anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
216 219anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 387first strand
Strand 2
B
515 517anti-parallel
Strand 3
B
435 436anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
722 727first strand
Strand 2
B
683 688parallel
Strand 3
B
640 645parallel
Strand 4
B
744 747parallel
Strand 5
B
769 772parallel
Strand 6
B
791 792parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 204first strand
Strand 2
C
222 234anti-parallel
Strand 3
C
241 250anti-parallel
Strand 4
C
156 161parallel
Strand 5
C
83 87parallel
Strand 6
C
332 337parallel
Strand 7
C
371 374parallel
Strand 8
C
529 531parallel
Strand 9
C
556 558parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 173first strand
Strand 2
C
176 180anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 210first strand
Strand 2
C
216 219anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 386first strand
Strand 2
C
515 517anti-parallel
Strand 3
C
435 436anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
722 727first strand
Strand 2
C
683 688parallel
Strand 3
C
640 645parallel
Strand 4
C
744 747parallel
Strand 5
C
769 772parallel
Strand 6
C
791 792parallel
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