Analysis of interatomic Contacts of Structural Units in PDB entry:
8R4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R4P entry

There is 1 chain in PDB entry 8R4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 26LEU 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8R4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 28Right-handed 310
Helix 2
AA2
A
29 54Right-handed alpha
Helix 3
AA3
A
55 76Right-handed alpha
Helix 4
AA4
A
80 101Right-handed alpha
Helix 5
AA5
A
102 104Right-handed 310
Helix 6
AA6
A
109 113Right-handed 310
Helix 7
AA7
A
149 170Right-handed alpha
Helix 8
AA8
A
198 203Right-handed alpha
Helix 9
AA9
A
258 277Right-handed alpha
Helix 10
AB1
A
301 327Right-handed alpha
Helix 11
AB2
A
350 376Right-handed alpha
Helix 12
AB3
A
377 380Right-handed 310
Helix 13
AB4
A
381 391Right-handed alpha
Helix 14
AB5
A
425 440Right-handed alpha
Helix 15
AB6
A
440 459Right-handed alpha
Helix 16
AB7
A
459 479Right-handed alpha
Helix 17
AB8
A
487 489Right-handed 310
Helix 18
AB9
A
510 524Right-handed alpha
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There are 3 sheets in PDB entry 8R4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
119 127anti-parallel
Strand 3
A
180 190anti-parallel
Strand 4
A
245 256anti-parallel
Strand 5
A
221 232anti-parallel
Strand 6
A
211 218anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
296 297anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 495first strand
Strand 2
A
505 509anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il