Analysis of interatomic Contacts of Structural Units in PDB entry:
8R4V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R4V entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8R4V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 62LYS 220
A
 TRP 222ARG 385
B
 ALA 61LYS 220
B
 TRP 222ASP 384
C
 ALA 61LYS 220
C
 TRP 222ARG 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 8R4V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 119Right-handed alpha
Helix 2
AA2
A
150 158Right-handed alpha
Helix 3
AA3
A
161 182Right-handed alpha
Helix 4
AA4
A
225 229Right-handed 310
Helix 5
AA5
A
230 235Right-handed alpha
Helix 6
AA6
A
240 259Right-handed alpha
Helix 7
AA7
A
267 278Right-handed alpha
Helix 8
AA8
A
287 298Right-handed alpha
Helix 9
AA9
A
301 305Right-handed 310
Helix 10
AB1
A
307 314Right-handed alpha
Helix 11
AB2
A
314 319Right-handed alpha
Helix 12
AB3
A
323 335Right-handed alpha
Helix 13
AB4
A
346 357Right-handed alpha
Helix 14
AB5
A
359 369Right-handed alpha
Helix 15
AB6
A
373 384Right-handed alpha
Helix 16
AB7
B
105 119Right-handed alpha
Helix 17
AB8
B
150 158Right-handed alpha
Helix 18
AB9
B
161 182Right-handed alpha
Helix 19
AC1
B
225 229Right-handed 310
Helix 20
AC2
B
230 235Right-handed alpha
Helix 21
AC3
B
240 259Right-handed alpha
Helix 22
AC4
B
267 278Right-handed alpha
Helix 23
AC5
B
287 298Right-handed alpha
Helix 24
AC6
B
301 305Right-handed 310
Helix 25
AC7
B
307 314Right-handed alpha
Helix 26
AC8
B
314 319Right-handed alpha
Helix 27
AC9
B
323 335Right-handed alpha
Helix 28
AD1
B
346 357Right-handed alpha
Helix 29
AD2
B
359 369Right-handed alpha
Helix 30
AD3
B
373 384Right-handed alpha
Helix 31
AD4
C
103 119Right-handed alpha
Helix 32
AD5
C
150 158Right-handed alpha
Helix 33
AD6
C
161 182Right-handed alpha
Helix 34
AD7
C
225 229Right-handed 310
Helix 35
AD8
C
230 235Right-handed alpha
Helix 36
AD9
C
240 259Right-handed alpha
Helix 37
AE1
C
267 278Right-handed alpha
Helix 38
AE2
C
287 298Right-handed alpha
Helix 39
AE3
C
301 305Right-handed 310
Helix 40
AE4
C
307 314Right-handed alpha
Helix 41
AE5
C
314 319Right-handed alpha
Helix 42
AE6
C
323 335Right-handed alpha
Helix 43
AE7
C
346 357Right-handed alpha
Helix 44
AE8
C
359 369Right-handed alpha
Helix 45
AE9
C
373 384Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8R4V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 75first strand
Strand 2
A
78 85anti-parallel
Strand 3
A
91 98anti-parallel
Strand 4
A
137 143anti-parallel
Strand 5
A
128 133anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
195 196anti-parallel
Strand 3
A
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
211 212anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
66 75anti-parallel
Strand 3
B
78 85anti-parallel
Strand 4
B
91 98anti-parallel
Strand 5
B
137 143anti-parallel
Strand 6
B
128 133anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
195 196anti-parallel
Strand 3
B
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
211 212anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
66 75anti-parallel
Strand 3
C
78 85anti-parallel
Strand 4
C
91 98anti-parallel
Strand 5
C
137 143anti-parallel
Strand 6
C
128 133anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 149first strand
Strand 2
C
195 196anti-parallel
Strand 3
C
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
184 185first strand
Strand 2
C
211 212anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il