Analysis of interatomic Contacts of Structural Units in PDB entry:
8R54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R54 entry

There is 1 chain in PDB entry 8R54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 681GLU 2695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8R54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
713 719Right-handed alpha
Helix 2
AA2
A
744 750Right-handed alpha
Helix 3
AA3
A
809 813Right-handed 310
Helix 4
AA4
A
817 823Right-handed alpha
Helix 5
AA5
A
836 841Right-handed alpha
Helix 6
AA6
A
842 846Right-handed 310
Helix 7
AA7
A
1140 1142Right-handed 310
Helix 8
AA8
A
2337 2341Right-handed 310
Helix 9
AA9
A
2370 2378Right-handed alpha
Helix 10
AB1
A
2387 2391Right-handed 310
Helix 11
AB2
A
2416 2421Right-handed alpha
Helix 12
AB3
A
2435 2443Right-handed alpha
Helix 13
AB4
A
2451 2465Right-handed alpha
Helix 14
AB5
A
2518 2529Right-handed alpha
Helix 15
AB6
A
2555 2562Right-handed alpha
Helix 16
AB7
A
2612 2642Right-handed alpha
Helix 17
AB8
A
2651 2662Right-handed alpha
Helix 18
AB9
A
2678 2682Right-handed 310
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There are 26 sheets in PDB entry 8R54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 692first strand
Strand 2
A
695 698anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 723first strand
Strand 2
A
726 728anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 756first strand
Strand 2
A
759 761anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
902 908first strand
Strand 2
A
864 872anti-parallel
Strand 3
A
936 938parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
902 908first strand
Strand 2
A
864 872anti-parallel
Strand 3
A
942 943parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
894 896first strand
Strand 2
A
883 886anti-parallel
Strand 3
A
912 918anti-parallel
Strand 4
A
925 930anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
965 968first strand
Strand 2
A
1016 1021anti-parallel
Strand 3
A
1056 1061anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
984 985first strand
Strand 2
A
990 996anti-parallel
Strand 3
A
1003 1007anti-parallel
Strand 4
A
1115 1116anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1044 1050first strand
Strand 2
A
1031 1039anti-parallel
Strand 3
A
1074 1085anti-parallel
Strand 4
A
1096 1102anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1121 1123first strand
Strand 2
A
1128 1130anti-parallel
Strand 3
A
1136 1138anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1150first strand
Strand 2
A
1494 1499anti-parallel
Strand 3
A
1485 1489anti-parallel
Strand 4
A
1474 1479anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1180first strand
Strand 2
A
1186 1189anti-parallel
Strand 3
A
1193 1197anti-parallel
Strand 4
A
1207 1208anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1218 1221first strand
Strand 2
A
1228 1232anti-parallel
Strand 3
A
1237 1239anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1297 1301first strand
Strand 2
A
1304 1308anti-parallel
Strand 3
A
1314 1318anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1348 1350first strand
Strand 2
A
1357 1361anti-parallel
Strand 3
A
1364 1368anti-parallel
Strand 4
A
1374 1378anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1405 1410first strand
Strand 2
A
1416 1421anti-parallel
Strand 3
A
1427 1432anti-parallel
Strand 4
A
1438 1442anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1511 1515first strand
Strand 2
A
1520 1524anti-parallel
Strand 3
A
1530 1535anti-parallel
Strand 4
A
1541 1547anti-parallel
Strand 5
A
1553 1557anti-parallel
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There are 43 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1565 1568first strand
Strand 2
A
1574 1578anti-parallel
Strand 3
A
1584 1589anti-parallel
Strand 4
A
1595 1599anti-parallel
Strand 5
A
1604 1610anti-parallel
Strand 6
A
1617 1621anti-parallel
Strand 7
A
1627 1632anti-parallel
Strand 8
A
1638 1642anti-parallel
Strand 9
A
1648 1654anti-parallel
Strand 10
A
1659 1665anti-parallel
Strand 11
A
1672 1678anti-parallel
Strand 12
A
1683 1689anti-parallel
Strand 13
A
1692 1698anti-parallel
Strand 14
A
1704 1707anti-parallel
Strand 15
A
1713 1720anti-parallel
Strand 16
A
1729 1736anti-parallel
Strand 17
A
1745 1748anti-parallel
Strand 18
A
1759 1769anti-parallel
Strand 19
A
1772 1780anti-parallel
Strand 20
A
1785 1789anti-parallel
Strand 21
A
1796 1799anti-parallel
Strand 22
A
1809 1812anti-parallel
Strand 23
A
1819 1823anti-parallel
Strand 24
A
1829 1834anti-parallel
Strand 25
A
1837 1843anti-parallel
Strand 26
A
1849 1853anti-parallel
Strand 27
A
1859 1865anti-parallel
Strand 28
A
1868 1872anti-parallel
Strand 29
A
1878 1882anti-parallel
Strand 30
A
1891 1893anti-parallel
Strand 31
A
1899 1906anti-parallel
Strand 32
A
1911 1916anti-parallel
Strand 33
A
1924 1928anti-parallel
Strand 34
A
1934 1939anti-parallel
Strand 35
A
1944 1950anti-parallel
Strand 36
A
1956 1961anti-parallel
Strand 37
A
1964 1970anti-parallel
Strand 38
A
1977 1983anti-parallel
Strand 39
A
1988 1992anti-parallel
Strand 40
A
2002 2007anti-parallel
Strand 41
A
2015 2021anti-parallel
Strand 42
A
2027 2034anti-parallel
Strand 43
A
2037 2038anti-parallel
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There are 46 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1751 1756first strand
Strand 2
A
1759 1769anti-parallel
Strand 3
A
1772 1780anti-parallel
Strand 4
A
1785 1789anti-parallel
Strand 5
A
1796 1799anti-parallel
Strand 6
A
1809 1812anti-parallel
Strand 7
A
1819 1823anti-parallel
Strand 8
A
1829 1834anti-parallel
Strand 9
A
1837 1843anti-parallel
Strand 10
A
1849 1853anti-parallel
Strand 11
A
1859 1865anti-parallel
Strand 12
A
1868 1872anti-parallel
Strand 13
A
1878 1882anti-parallel
Strand 14
A
1891 1893anti-parallel
Strand 15
A
1899 1906anti-parallel
Strand 16
A
1911 1916anti-parallel
Strand 17
A
1924 1928anti-parallel
Strand 18
A
1934 1939anti-parallel
Strand 19
A
1944 1950anti-parallel
Strand 20
A
1956 1961anti-parallel
Strand 21
A
1964 1970anti-parallel
Strand 22
A
1977 1983anti-parallel
Strand 23
A
1988 1992anti-parallel
Strand 24
A
2002 2007anti-parallel
Strand 25
A
2015 2021anti-parallel
Strand 26
A
2027 2034anti-parallel
Strand 27
A
2042 2046anti-parallel
Strand 28
A
2053 2056anti-parallel
Strand 29
A
2059 2064anti-parallel
Strand 30
A
2067 2071anti-parallel
Strand 31
A
2075 2081anti-parallel
Strand 32
A
2087 2094anti-parallel
Strand 33
A
2098 2106anti-parallel
Strand 34
A
2112 2117anti-parallel
Strand 35
A
2126 2132anti-parallel
Strand 36
A
2138 2142anti-parallel
Strand 37
A
2147 2153anti-parallel
Strand 38
A
2159 2162anti-parallel
Strand 39
A
2171 2175anti-parallel
Strand 40
A
2181 2184anti-parallel
Strand 41
A
2187 2191anti-parallel
Strand 42
A
2197 2200anti-parallel
Strand 43
A
2203 2207anti-parallel
Strand 44
A
2213 2218anti-parallel
Strand 45
A
2224 2227anti-parallel
Strand 46
A
2238 2240anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1995 1996first strand
Strand 2
A
1999 2000anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2248 2249first strand
Strand 2
A
2261 2262anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2271 2275first strand
Strand 2
A
2281 2286anti-parallel
Strand 3
A
2290 2296anti-parallel
Strand 4
A
2302 2306anti-parallel
Strand 5
A
2312 2318anti-parallel
Strand 6
A
2324 2327anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2342 2344first strand
Strand 2
A
2349 2351anti-parallel
Strand 3
A
2356 2358anti-parallel
Strand 4
A
2363 2364anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2500 2505first strand
Strand 2
A
2508 2513anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2532 2541first strand
Strand 2
A
2544 2550anti-parallel
Strand 3
A
2603 2609parallel
Strand 4
A
2593 2600anti-parallel
Strand 5
A
2576 2582anti-parallel
Strand 6
A
2567 2570anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2667 2671first strand
Strand 2
A
2688 2692anti-parallel
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