Analysis of interatomic Contacts of Structural Units in PDB entry:
8R56

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R56 entry

There are 4 chains in PDB entry 8R56 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	ILE 679
B	VAL 11	ILE 679
C	LYS 9	ILE 679
D	VAL 7	ILE 679

There are 75 helices in PDB entry 8R56. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	162	173	Right-handed alpha
Helix 2	AA2	A	232	245	Right-handed alpha
Helix 3	AA3	A	251	257	Right-handed 310
Helix 4	AA4	A	265	279	Right-handed alpha
Helix 5	AA5	A	316	327	Right-handed alpha
Helix 6	AA6	A	343	353	Right-handed alpha
Helix 7	AA7	A	380	395	Right-handed alpha
Helix 8	AA8	A	422	427	Right-handed alpha
Helix 9	AA9	A	429	445	Right-handed alpha
Helix 10	AB1	A	461	466	Right-handed alpha
Helix 11	AB2	A	483	485	Right-handed 310
Helix 12	AB3	A	486	497	Right-handed alpha
Helix 13	AB4	A	518	530	Right-handed alpha
Helix 14	AB5	A	542	546	Right-handed 310
Helix 15	AB6	A	552	584	Right-handed alpha
Helix 16	AB7	A	590	594	Right-handed 310
Helix 17	AB8	A	598	604	Right-handed 310
Helix 18	AB9	A	669	675	Right-handed alpha
Helix 19	AC1	A	676	679	Right-handed 310
Helix 20	AC2	B	162	173	Right-handed alpha
Helix 21	AC3	B	232	245	Right-handed alpha
Helix 22	AC4	B	251	257	Right-handed 310
Helix 23	AC5	B	265	279	Right-handed alpha
Helix 24	AC6	B	316	327	Right-handed alpha
Helix 25	AC7	B	343	353	Right-handed alpha
Helix 26	AC8	B	380	395	Right-handed alpha
Helix 27	AC9	B	422	427	Right-handed alpha
Helix 28	AD1	B	429	445	Right-handed alpha
Helix 29	AD2	B	461	466	Right-handed alpha
Helix 30	AD3	B	483	485	Right-handed 310
Helix 31	AD4	B	486	497	Right-handed alpha
Helix 32	AD5	B	518	530	Right-handed alpha
Helix 33	AD6	B	542	546	Right-handed 310
Helix 34	AD7	B	552	584	Right-handed alpha
Helix 35	AD8	B	590	594	Right-handed 310
Helix 36	AD9	B	598	604	Right-handed 310
Helix 37	AE1	B	669	675	Right-handed alpha
Helix 38	AE2	B	676	679	Right-handed 310
Helix 39	AE3	C	162	173	Right-handed alpha
Helix 40	AE4	C	232	245	Right-handed alpha
Helix 41	AE5	C	251	257	Right-handed 310
Helix 42	AE6	C	265	279	Right-handed alpha
Helix 43	AE7	C	316	327	Right-handed alpha
Helix 44	AE8	C	343	353	Right-handed alpha
Helix 45	AE9	C	380	395	Right-handed alpha
Helix 46	AF1	C	422	427	Right-handed alpha
Helix 47	AF2	C	429	445	Right-handed alpha
Helix 48	AF3	C	461	466	Right-handed alpha
Helix 49	AF4	C	483	485	Right-handed 310
Helix 50	AF5	C	486	497	Right-handed alpha
Helix 51	AF6	C	518	530	Right-handed alpha
Helix 52	AF7	C	542	546	Right-handed 310
Helix 53	AF8	C	552	584	Right-handed alpha
Helix 54	AF9	C	590	594	Right-handed 310
Helix 55	AG1	C	598	604	Right-handed 310
Helix 56	AG2	C	669	675	Right-handed alpha
Helix 57	AG3	C	676	679	Right-handed 310
Helix 58	AG4	D	162	173	Right-handed alpha
Helix 59	AG5	D	232	245	Right-handed alpha
Helix 60	AG6	D	251	257	Right-handed 310
Helix 61	AG7	D	265	279	Right-handed alpha
Helix 62	AG8	D	316	327	Right-handed alpha
Helix 63	AG9	D	343	353	Right-handed alpha
Helix 64	AH1	D	380	395	Right-handed alpha
Helix 65	AH2	D	422	427	Right-handed alpha
Helix 66	AH3	D	429	445	Right-handed alpha
Helix 67	AH4	D	461	466	Right-handed alpha
Helix 68	AH5	D	483	485	Right-handed 310
Helix 69	AH6	D	486	497	Right-handed alpha
Helix 70	AH7	D	518	530	Right-handed alpha
Helix 71	AH8	D	542	546	Right-handed 310
Helix 72	AH9	D	552	584	Right-handed alpha
Helix 73	AI1	D	590	594	Right-handed 310
Helix 74	AI2	D	598	604	Right-handed 310
Helix 75	AI3	D	669	675	Right-handed alpha

There are 38 sheets in PDB entry 8R56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	15	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	27	33	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	66	first strand
Strand 2	A	39	44	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	213	218	anti-parallel
Strand 5	A	204	207	anti-parallel
Strand 6	A	146	149	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	54	58	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	103	110	anti-parallel
Strand 5	A	224	229	anti-parallel
Strand 6	A	194	199	anti-parallel
Strand 7	A	184	190	anti-parallel
Strand 8	A	130	134	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	283	287	parallel
Strand 3	A	330	335	parallel
Strand 4	A	402	405	parallel
Strand 5	A	452	454	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	297	first strand
Strand 2	A	300	303	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	372	375	anti-parallel
Strand 3	A	365	367	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	589	first strand
Strand 2	A	608	610	anti-parallel
Strand 3	A	614	616	anti-parallel
Strand 4	A	661	664	anti-parallel
Strand 5	A	636	638	anti-parallel
Strand 6	A	644	645	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	631	first strand
Strand 2	A	648	653	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	27	33	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	66	first strand
Strand 2	B	39	51	anti-parallel
Strand 3	B	117	123	anti-parallel
Strand 4	B	213	218	anti-parallel
Strand 5	B	204	207	anti-parallel
Strand 6	B	146	149	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	74	first strand
Strand 2	B	79	84	anti-parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	103	110	anti-parallel
Strand 5	B	224	229	anti-parallel
Strand 6	B	194	199	anti-parallel
Strand 7	B	184	190	anti-parallel
Strand 8	B	130	134	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	283	287	parallel
Strand 3	B	330	335	parallel
Strand 4	B	402	405	parallel
Strand 5	B	452	454	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	297	first strand
Strand 2	B	300	303	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	372	375	anti-parallel
Strand 3	B	366	367	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	536	537	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	589	first strand
Strand 2	B	608	610	anti-parallel
Strand 3	B	614	616	anti-parallel
Strand 4	B	661	664	anti-parallel
Strand 5	B	636	638	anti-parallel
Strand 6	B	644	645	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	631	first strand
Strand 2	B	648	653	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	15	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	27	33	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	66	first strand
Strand 2	C	39	44	anti-parallel
Strand 3	C	117	123	anti-parallel
Strand 4	C	213	218	anti-parallel
Strand 5	C	204	207	anti-parallel
Strand 6	C	146	149	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	54	58	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	74	first strand
Strand 2	C	79	84	anti-parallel
Strand 3	C	93	100	anti-parallel
Strand 4	C	103	110	anti-parallel
Strand 5	C	224	229	anti-parallel
Strand 6	C	194	199	anti-parallel
Strand 7	C	184	190	anti-parallel
Strand 8	C	130	134	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	261	first strand
Strand 2	C	283	287	parallel
Strand 3	C	330	335	parallel
Strand 4	C	402	405	parallel
Strand 5	C	452	454	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	297	first strand
Strand 2	C	300	303	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	372	375	anti-parallel
Strand 3	C	365	367	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	588	589	first strand
Strand 2	C	608	610	anti-parallel
Strand 3	C	614	616	anti-parallel
Strand 4	C	661	664	anti-parallel
Strand 5	C	636	638	anti-parallel
Strand 6	C	644	645	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	626	631	first strand
Strand 2	C	648	653	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	15	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	27	33	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	66	first strand
Strand 2	D	39	44	anti-parallel
Strand 3	D	117	123	anti-parallel
Strand 4	D	213	218	anti-parallel
Strand 5	D	204	207	anti-parallel
Strand 6	D	146	149	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	51	first strand
Strand 2	D	54	58	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	74	first strand
Strand 2	D	78	84	anti-parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	103	110	anti-parallel
Strand 5	D	224	229	anti-parallel
Strand 6	D	194	199	anti-parallel
Strand 7	D	184	190	anti-parallel
Strand 8	D	130	134	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	261	first strand
Strand 2	D	283	287	parallel
Strand 3	D	330	335	parallel
Strand 4	D	402	405	parallel
Strand 5	D	452	455	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	297	first strand
Strand 2	D	300	303	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	372	375	anti-parallel
Strand 3	D	366	367	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	470	first strand
Strand 2	D	502	503	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	506	first strand
Strand 2	D	536	537	parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	588	589	first strand
Strand 2	D	608	610	anti-parallel
Strand 3	D	614	616	anti-parallel
Strand 4	D	661	664	anti-parallel
Strand 5	D	636	638	anti-parallel
Strand 6	D	644	645	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	626	631	first strand
Strand 2	D	648	653	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R56

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R56