Analysis of interatomic Contacts of Structural Units in PDB entry:
8R57

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R57 entry

There are 43 chains in PDB entry 8R57 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	MET 1	PRO 83
M	ASP 26	SER 143
F	THR 3	PRO 213
P	GLY 10	ARG 200
Q	VAL 4	TYR 148
U	VAL 24	ASP 126
T	SER 14	ALA 153
Z	LYS 36	THR 106
c	GLN 4	ARG 65
d	GLY 2	ARG 56
g	GLU 6	SER 326
S	SER 2	ARG 141
R	LYS 22	GLY 140
h	GLY 2	LYS 72
A	G 1159	C 1179
A	G 1181	U 1191
A	G 1193	G 1218
A	C 1221	A 1235
A	U 1237	C 1264
A	A 1266	A 1266
A	G 1268	G 1273
A	G 1275	G 1275
A	U 1277	C 1284
A	G 1286	G 1314
A	U 1316	A 1330
A	C 1332	A 1336
A	C 1338	C 1370
A	C 1373	U 1384
A	C 1386	U 1406
A	A 1408	A 1434
A	G 1436	G 1440
A	G 1442	C 1448
A	U 1450	C 1479
A	G 1481	A 1535
A	U 1537	U 1537
A	C 1539	U 1569
A	G 1571	G 1581
A	G 1583	G 1583
A	A 1585	A 1606
A	C 1608	C 1611
A	C 1613	U 1617
A	G 1619	C 1633
f	PRO 12	TYR 75

There are 66 helices in PDB entry 8R57. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	4	19	Right-handed alpha
Helix 2	AA2	K	38	52	Right-handed alpha
Helix 3	AA3	K	69	80	Right-handed alpha
Helix 4	AA4	M	27	30	Right-handed 310
Helix 5	AA5	M	31	42	Right-handed alpha
Helix 6	AA6	M	47	57	Right-handed alpha
Helix 7	AA7	M	71	85	Right-handed alpha
Helix 8	AA8	M	94	102	Right-handed alpha
Helix 9	AA9	M	132	143	Right-handed alpha
Helix 10	AB1	F	6	29	Right-handed alpha
Helix 11	AB2	F	60	62	Right-handed 310
Helix 12	AB3	F	63	78	Right-handed alpha
Helix 13	AB4	F	97	111	Right-handed alpha
Helix 14	AB5	F	114	130	Right-handed alpha
Helix 15	AB6	F	163	167	Right-handed alpha
Helix 16	AB7	P	15	17	Right-handed 310
Helix 17	AB8	P	38	42	Right-handed 310
Helix 18	AB9	P	58	62	Right-handed 310
Helix 19	AC1	P	63	71	Right-handed alpha
Helix 20	AC2	P	75	79	Right-handed 310
Helix 21	AC3	P	81	101	Right-handed alpha
Helix 22	AC4	P	103	114	Right-handed alpha
Helix 23	AC5	P	138	159	Right-handed alpha
Helix 24	AC6	P	164	179	Right-handed alpha
Helix 25	AC7	P	183	199	Right-handed alpha
Helix 26	AC8	Q	43	45	Right-handed 310
Helix 27	AC9	Q	47	49	Right-handed 310
Helix 28	AD1	Q	50	62	Right-handed alpha
Helix 29	AD2	Q	63	67	Right-handed 310
Helix 30	AD3	Q	81	103	Right-handed alpha
Helix 31	AD4	Q	104	119	Right-handed alpha
Helix 32	AD5	Q	120	123	Right-handed 310
Helix 33	AD6	U	36	54	Right-handed alpha
Helix 34	AD7	U	102	110	Right-handed alpha
Helix 35	AD8	T	18	22	Right-handed 310
Helix 36	AD9	T	23	39	Right-handed alpha
Helix 37	AE1	T	44	48	Right-handed 310
Helix 38	AE2	T	64	80	Right-handed alpha
Helix 39	AE3	T	84	92	Right-handed alpha
Helix 40	AE4	T	109	122	Right-handed alpha
Helix 41	AE5	T	137	149	Right-handed alpha
Helix 42	AE6	Z	44	54	Right-handed alpha
Helix 43	AE7	Z	55	58	Right-handed 310
Helix 44	AE8	Z	62	71	Right-handed alpha
Helix 45	AE9	Z	73	87	Right-handed alpha
Helix 46	AF1	d	15	19	Right-handed 310
Helix 47	AF2	d	32	36	Right-handed 310
Helix 48	AF3	d	40	51	Right-handed alpha
Helix 49	AF4	S	25	30	Right-handed alpha
Helix 50	AF5	S	31	33	Right-handed 310
Helix 51	AF6	S	37	48	Right-handed alpha
Helix 52	AF7	S	55	59	Right-handed 310
Helix 53	AF8	S	60	72	Right-handed alpha
Helix 54	AF9	S	80	84	Right-handed 310
Helix 55	AG1	S	100	117	Right-handed alpha
Helix 56	AG2	S	119	127	Right-handed alpha
Helix 57	AG3	R	29	36	Right-handed alpha
Helix 58	AG4	R	37	45	Right-handed alpha
Helix 59	AG5	R	46	55	Right-handed alpha
Helix 60	AG6	R	58	74	Right-handed alpha
Helix 61	AG7	R	94	98	Right-handed 310
Helix 62	AG8	R	116	120	Right-handed 310
Helix 63	AG9	R	124	128	Right-handed 310
Helix 64	AH1	h	6	20	Right-handed alpha
Helix 65	AH2	h	27	35	Right-handed alpha
Helix 66	AH3	h	43	64	Right-handed alpha

There are 24 sheets in PDB entry 8R57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	24	first strand
Strand 2	K	63	68	anti-parallel
Strand 3	K	55	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	44	46	first strand
Strand 2	M	121	124	anti-parallel
Strand 3	M	63	66	anti-parallel
Strand 4	M	91	92	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	41	first strand
Strand 2	F	46	52	anti-parallel
Strand 3	F	84	90	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	155	first strand
Strand 2	F	133	140	anti-parallel
Strand 3	F	181	189	anti-parallel
Strand 4	F	168	176	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	210	first strand
Strand 2	h	39	40	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	13	14	first strand
Strand 2	P	18	19	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	119	121	first strand
Strand 2	P	134	137	anti-parallel
Strand 3	c	37	43	parallel
Strand 4	c	23	30	anti-parallel
Strand 5	c	6	17	anti-parallel
Strand 6	c	51	54	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	13	19	first strand
Strand 2	Q	22	30	anti-parallel
Strand 3	Q	69	76	anti-parallel
Strand 4	Q	35	37	parallel
Strand 5	Q	40	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	58	63	first strand
Strand 2	U	85	101	anti-parallel
Strand 3	U	26	34	anti-parallel
Strand 4	U	119	125	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	67	74	first strand
Strand 2	U	85	101	anti-parallel
Strand 3	d	53	56	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	95	98	first strand
Strand 2	T	101	105	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	126	127	first strand
Strand 2	T	135	136	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	60	61	first strand
Strand 2	Z	101	103	anti-parallel
Strand 3	Z	91	94	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	30	31	first strand
Strand 2	d	38	39	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	7	15	first strand
Strand 2	g	319	326	anti-parallel
Strand 3	g	310	315	anti-parallel
Strand 4	g	299	304	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	21	25	first strand
Strand 2	g	33	38	anti-parallel
Strand 3	g	43	47	anti-parallel
Strand 4	g	64	69	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	76	81	first strand
Strand 2	g	87	92	anti-parallel
Strand 3	g	97	101	anti-parallel
Strand 4	g	107	111	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	118	123	first strand
Strand 2	g	129	134	anti-parallel
Strand 3	g	139	143	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	166	168	first strand
Strand 2	g	179	184	anti-parallel
Strand 3	g	189	193	anti-parallel
Strand 4	g	198	203	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	212	215	first strand
Strand 2	g	221	225	anti-parallel
Strand 3	g	232	235	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	251	256	first strand
Strand 2	g	262	267	anti-parallel
Strand 3	g	271	275	anti-parallel
Strand 4	g	280	285	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	12	15	first strand
Strand 2	S	18	21	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	84	86	first strand
Strand 2	R	101	105	parallel
Strand 3	R	110	114	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	57	60	first strand
Strand 2	f	63	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R57

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R57