Analysis of interatomic Contacts of Structural Units in PDB entry:
8R5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R5D entry

There are 2 chains in PDB entry 8R5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 340PRO 511
B
 GLU 340PRO 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8R5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
347 351Right-handed 310
Helix 2
AA2
A
427 430Right-handed 310
Helix 3
AA3
B
347 351Right-handed 310
Helix 4
AA4
B
427 430Right-handed 310
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There are 4 sheets in PDB entry 8R5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
363 366anti-parallel
Strand 3
A
506 510anti-parallel
Strand 4
A
396 403anti-parallel
Strand 5
A
460 466anti-parallel
Strand 6
A
471 476anti-parallel
Strand 7
A
481 487anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
494 500anti-parallel
Strand 3
A
409 415anti-parallel
Strand 4
A
432 438anti-parallel
Strand 5
A
441 444anti-parallel
Strand 6
A
451 452anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
363 366anti-parallel
Strand 3
B
507 510anti-parallel
Strand 4
B
396 403anti-parallel
Strand 5
B
460 466anti-parallel
Strand 6
B
471 476anti-parallel
Strand 7
B
481 487anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 387first strand
Strand 2
B
494 500anti-parallel
Strand 3
B
409 415anti-parallel
Strand 4
B
432 438anti-parallel
Strand 5
B
441 444anti-parallel
Strand 6
B
451 452anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il