Analysis of interatomic Contacts of Structural Units in PDB entry:
8R5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R5I entry

There are 6 chains in PDB entry 8R5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 594
B	SER 24	ARG 66
C	MET 1	PHE 594
D	SER 24	ARG 66
E	MET 1	PHE 594
F	SER 24	ARG 66

There are 93 helices in PDB entry 8R5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	7	Right-handed 310
Helix 2	AA2	A	16	26	Right-handed alpha
Helix 3	AA3	A	27	30	Right-handed 310
Helix 4	AA4	A	37	42	Right-handed 310
Helix 5	AA5	A	46	53	Right-handed alpha
Helix 6	AA6	A	54	60	Right-handed 310
Helix 7	AA7	A	61	82	Right-handed alpha
Helix 8	AA8	A	123	136	Right-handed alpha
Helix 9	AA9	A	137	145	Right-handed alpha
Helix 10	AB1	A	172	178	Right-handed alpha
Helix 11	AB2	A	200	213	Right-handed alpha
Helix 12	AB3	A	218	226	Right-handed alpha
Helix 13	AB4	A	227	235	Right-handed alpha
Helix 14	AB5	A	238	242	Right-handed 310
Helix 15	AB6	A	255	265	Right-handed alpha
Helix 16	AB7	A	283	296	Right-handed alpha
Helix 17	AB8	A	299	307	Right-handed alpha
Helix 18	AB9	A	342	344	Right-handed 310
Helix 19	AC1	A	345	360	Right-handed alpha
Helix 20	AC2	A	378	383	Right-handed alpha
Helix 21	AC3	A	385	393	Right-handed alpha
Helix 22	AC4	A	413	419	Right-handed alpha
Helix 23	AC5	A	438	452	Right-handed alpha
Helix 24	AC6	A	470	484	Right-handed alpha
Helix 25	AC7	A	488	505	Right-handed alpha
Helix 26	AC8	A	518	530	Right-handed alpha
Helix 27	AC9	A	556	568	Right-handed alpha
Helix 28	AD1	A	570	581	Right-handed alpha
Helix 29	AD2	A	581	592	Right-handed alpha
Helix 30	AD3	B	24	28	Right-handed 310
Helix 31	AD4	B	29	64	Right-handed alpha
Helix 32	AD5	C	3	7	Right-handed 310
Helix 33	AD6	C	16	26	Right-handed alpha
Helix 34	AD7	C	27	30	Right-handed 310
Helix 35	AD8	C	37	42	Right-handed 310
Helix 36	AD9	C	46	53	Right-handed alpha
Helix 37	AE1	C	54	60	Right-handed 310
Helix 38	AE2	C	61	82	Right-handed alpha
Helix 39	AE3	C	123	136	Right-handed alpha
Helix 40	AE4	C	137	145	Right-handed alpha
Helix 41	AE5	C	172	178	Right-handed alpha
Helix 42	AE6	C	200	213	Right-handed alpha
Helix 43	AE7	C	218	226	Right-handed alpha
Helix 44	AE8	C	227	235	Right-handed alpha
Helix 45	AE9	C	238	242	Right-handed 310
Helix 46	AF1	C	255	265	Right-handed alpha
Helix 47	AF2	C	283	296	Right-handed alpha
Helix 48	AF3	C	299	307	Right-handed alpha
Helix 49	AF4	C	342	344	Right-handed 310
Helix 50	AF5	C	345	360	Right-handed alpha
Helix 51	AF6	C	378	383	Right-handed alpha
Helix 52	AF7	C	385	393	Right-handed alpha
Helix 53	AF8	C	413	419	Right-handed alpha
Helix 54	AF9	C	438	452	Right-handed alpha
Helix 55	AG1	C	470	484	Right-handed alpha
Helix 56	AG2	C	488	505	Right-handed alpha
Helix 57	AG3	C	515	517	Right-handed 310
Helix 58	AG4	C	518	530	Right-handed alpha
Helix 59	AG5	C	556	568	Right-handed alpha
Helix 60	AG6	C	570	581	Right-handed alpha
Helix 61	AG7	C	581	592	Right-handed alpha
Helix 62	AG8	D	24	28	Right-handed 310
Helix 63	AG9	D	29	64	Right-handed alpha
Helix 64	AH1	E	16	26	Right-handed alpha
Helix 65	AH2	E	27	30	Right-handed 310
Helix 66	AH3	E	37	42	Right-handed 310
Helix 67	AH4	E	46	53	Right-handed alpha
Helix 68	AH5	E	54	60	Right-handed 310
Helix 69	AH6	E	61	82	Right-handed alpha
Helix 70	AH7	E	123	136	Right-handed alpha
Helix 71	AH8	E	137	145	Right-handed alpha
Helix 72	AH9	E	172	178	Right-handed alpha
Helix 73	AI1	E	200	213	Right-handed alpha
Helix 74	AI2	E	218	226	Right-handed alpha
Helix 75	AI3	E	227	235	Right-handed alpha
Helix 76	AI4	E	238	242	Right-handed 310
Helix 77	AI5	E	255	265	Right-handed alpha
Helix 78	AI6	E	283	296	Right-handed alpha
Helix 79	AI7	E	299	307	Right-handed alpha
Helix 80	AI8	E	342	344	Right-handed 310
Helix 81	AI9	E	345	360	Right-handed alpha
Helix 82	AJ1	E	378	383	Right-handed alpha
Helix 83	AJ2	E	385	393	Right-handed alpha
Helix 84	AJ3	E	413	419	Right-handed alpha
Helix 85	AJ4	E	438	452	Right-handed alpha
Helix 86	AJ5	E	470	484	Right-handed alpha
Helix 87	AJ6	E	488	505	Right-handed alpha
Helix 88	AJ7	E	518	530	Right-handed alpha
Helix 89	AJ8	E	556	568	Right-handed alpha
Helix 90	AJ9	E	570	581	Right-handed alpha
Helix 91	AK1	E	581	592	Right-handed alpha
Helix 92	AK2	F	24	28	Right-handed 310
Helix 93	AK3	F	29	64	Right-handed alpha

There are 21 sheets in PDB entry 8R5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	96	99	anti-parallel
Strand 3	E	104	107	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	C	96	99	anti-parallel
Strand 3	C	90	93	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	198	199	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	279	281	anti-parallel
Strand 3	A	316	321	anti-parallel
Strand 4	A	327	332	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	339	340	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	425	430	anti-parallel
Strand 3	A	396	404	anti-parallel
Strand 4	A	407	412	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	433	first strand
Strand 2	A	436	437	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	541	first strand
Strand 2	A	544	552	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	E	96	99	anti-parallel
Strand 3	E	90	93	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	195	first strand
Strand 2	C	198	199	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	279	281	anti-parallel
Strand 3	C	316	321	anti-parallel
Strand 4	C	327	332	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	313	first strand
Strand 2	C	339	340	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	377	first strand
Strand 2	C	425	430	anti-parallel
Strand 3	C	396	404	anti-parallel
Strand 4	C	407	412	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	432	433	first strand
Strand 2	C	436	437	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	533	541	first strand
Strand 2	C	544	552	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	195	first strand
Strand 2	E	198	199	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	276	first strand
Strand 2	E	279	281	anti-parallel
Strand 3	E	316	321	anti-parallel
Strand 4	E	327	332	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	313	first strand
Strand 2	E	339	340	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	377	first strand
Strand 2	E	425	430	anti-parallel
Strand 3	E	396	404	anti-parallel
Strand 4	E	407	412	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	432	433	first strand
Strand 2	E	436	437	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	533	541	first strand
Strand 2	E	544	552	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R5I