Analysis of interatomic Contacts of Structural Units in PDB entry:
8R5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R5N entry

There are 2 chains in PDB entry 8R5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 20ILE 184
B
 GLY 20ILE 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8R5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 55Right-handed alpha
Helix 2
AA2
A
63 65Right-handed 310
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
101 106Right-handed alpha
Helix 5
AA5
A
122 135Right-handed alpha
Helix 6
AA6
A
143 146Right-handed 310
Helix 7
AA7
B
41 55Right-handed alpha
Helix 8
AA8
B
63 65Right-handed 310
Helix 9
AA9
B
66 70Right-handed 310
Helix 10
AB1
B
101 106Right-handed alpha
Helix 11
AB2
B
122 135Right-handed alpha
Helix 12
AB3
B
143 146Right-handed 310
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There are 6 sheets in PDB entry 8R5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
21 31anti-parallel
Strand 3
A
89 97anti-parallel
Strand 4
A
80 83anti-parallel
Strand 5
A
72 75anti-parallel
Strand 6
A
59 61anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
21 31anti-parallel
Strand 3
A
179 183anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
166 173anti-parallel
Strand 4
A
157 160anti-parallel
Strand 5
A
149 152anti-parallel
Strand 6
A
139 141anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
21 31anti-parallel
Strand 3
B
89 97anti-parallel
Strand 4
B
80 83anti-parallel
Strand 5
B
72 75anti-parallel
Strand 6
B
59 61anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
21 31anti-parallel
Strand 3
B
179 183anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
107 112anti-parallel
Strand 3
B
166 173anti-parallel
Strand 4
B
157 160anti-parallel
Strand 5
B
149 152anti-parallel
Strand 6
B
139 141anti-parallel
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