Analysis of interatomic Contacts of Structural Units in PDB entry:
8R5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R5Y entry

There are 3 chains in PDB entry 8R5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 59MET 280
B
 ARG 12ALA 258
C
 GLY 1ILE 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8R5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 62Right-handed 310
Helix 2
AA2
A
63 69Right-handed alpha
Helix 3
AA3
A
99 107Right-handed alpha
Helix 4
AA4
A
158 163Right-handed 310
Helix 5
AA5
A
203 207Right-handed 310
Helix 6
AA6
A
210 214Right-handed 310
Helix 7
AA7
B
35 37Right-handed 310
Helix 8
AA8
B
82 86Right-handed alpha
Helix 9
AA9
B
89 99Right-handed alpha
Helix 10
AB1
B
142 147Right-handed alpha
Helix 11
AB2
B
169 173Right-handed 310
Helix 12
AB3
B
178 185Right-handed 310
Helix 13
AB4
C
43 48Right-handed alpha
Helix 14
AB5
C
64 69Right-handed 310
Helix 15
AB6
C
98 105Right-handed alpha
Helix 16
AB7
C
144 150Right-handed alpha
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There are 10 sheets in PDB entry 8R5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 80first strand
Strand 2
A
232 247anti-parallel
Strand 3
A
111 125anti-parallel
Strand 4
A
191 192anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
111 125anti-parallel
Strand 3
A
232 247anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
140 146anti-parallel
Strand 4
A
168 172anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
21 26anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
197 202parallel
Strand 3
B
102 112anti-parallel
Strand 4
B
239 253anti-parallel
Strand 5
B
64 65anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
239 253anti-parallel
Strand 3
B
69 71anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 81anti-parallel
Strand 3
B
219 231anti-parallel
Strand 4
B
118 128anti-parallel
Strand 5
B
187 191anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
208 216anti-parallel
Strand 3
C
110 121anti-parallel
Strand 4
C
163 172anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
208 216anti-parallel
Strand 3
C
110 121anti-parallel
Strand 4
C
221 222anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 86first strand
Strand 2
C
189 193anti-parallel
Strand 3
C
129 135anti-parallel
Strand 4
C
152 157anti-parallel
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