Analysis of interatomic Contacts of Structural Units in PDB entry:
8R60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R60 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 8R60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 716
C	MET 1	GLY 248
D	A 1	C 15
E	G 1	U 8
X	TYR 1	THR 4
X	PRO 6	THR 11
X	PRO 13	THR 18
X	PRO 20	THR 25
B	MET 1	GLN 756

There are 69 helices in PDB entry 8R60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	25	Right-handed alpha
Helix 3	AA3	A	31	50	Right-handed alpha
Helix 4	AA4	A	83	99	Right-handed alpha
Helix 5	AA5	A	126	138	Right-handed alpha
Helix 6	AA6	A	164	186	Right-handed alpha
Helix 7	AA7	A	187	194	Right-handed alpha
Helix 8	AA8	A	209	216	Right-handed alpha
Helix 9	AA9	A	225	235	Right-handed alpha
Helix 10	AB1	A	240	249	Right-handed alpha
Helix 11	AB2	A	302	312	Right-handed alpha
Helix 12	AB3	A	331	351	Right-handed alpha
Helix 13	AB4	A	363	370	Right-handed alpha
Helix 14	AB5	A	405	414	Right-handed alpha
Helix 15	AB6	A	433	452	Right-handed alpha
Helix 16	AB7	A	453	476	Right-handed alpha
Helix 17	AB8	A	571	580	Right-handed alpha
Helix 18	AB9	A	582	603	Right-handed alpha
Helix 19	AC1	A	607	613	Right-handed alpha
Helix 20	AC2	A	632	650	Right-handed alpha
Helix 21	AC3	A	652	674	Right-handed alpha
Helix 22	AC4	A	682	694	Right-handed alpha
Helix 23	AC5	A	697	714	Right-handed alpha
Helix 24	AC6	C	2	13	Right-handed alpha
Helix 25	AC7	C	13	23	Right-handed alpha
Helix 26	AC8	C	27	34	Right-handed alpha
Helix 27	AC9	C	42	51	Right-handed alpha
Helix 28	AD1	C	62	67	Right-handed alpha
Helix 29	AD2	C	92	103	Right-handed alpha
Helix 30	AD3	C	110	115	Right-handed alpha
Helix 31	AD4	C	115	127	Right-handed alpha
Helix 32	AD5	C	155	168	Right-handed alpha
Helix 33	AD6	C	169	173	Right-handed 310
Helix 34	AD7	C	179	193	Right-handed alpha
Helix 35	AD8	C	199	212	Right-handed alpha
Helix 36	AD9	C	225	231	Right-handed alpha
Helix 37	AE1	B	4	11	Right-handed 310
Helix 38	AE2	B	17	22	Right-handed 310
Helix 39	AE3	B	35	49	Right-handed alpha
Helix 40	AE4	B	84	99	Right-handed alpha
Helix 41	AE5	B	101	117	Right-handed alpha
Helix 42	AE6	B	118	124	Right-handed 310
Helix 43	AE7	B	138	153	Right-handed alpha
Helix 44	AE8	B	156	161	Right-handed 310
Helix 45	AE9	B	162	175	Right-handed alpha
Helix 46	AF1	B	214	222	Right-handed alpha
Helix 47	AF2	B	248	265	Right-handed alpha
Helix 48	AF3	B	274	293	Right-handed alpha
Helix 49	AF4	B	309	313	Right-handed 310
Helix 50	AF5	B	314	326	Right-handed alpha
Helix 51	AF6	B	330	345	Right-handed alpha
Helix 52	AF7	B	369	374	Right-handed 310
Helix 53	AF8	B	384	393	Right-handed alpha
Helix 54	AF9	B	412	426	Right-handed alpha
Helix 55	AG1	B	455	473	Right-handed alpha
Helix 56	AG2	B	508	512	Right-handed 310
Helix 57	AG3	B	518	536	Right-handed alpha
Helix 58	AG4	B	540	560	Right-handed alpha
Helix 59	AG5	B	572	583	Right-handed alpha
Helix 60	AG6	B	585	589	Right-handed 310
Helix 61	AG7	B	590	594	Right-handed 310
Helix 62	AG8	B	607	612	Right-handed alpha
Helix 63	AG9	B	617	625	Right-handed alpha
Helix 64	AH1	B	662	666	Right-handed 310
Helix 65	AH2	B	672	677	Right-handed 310
Helix 66	AH3	B	680	700	Right-handed alpha
Helix 67	AH4	B	701	704	Right-handed 310
Helix 68	AH5	B	713	732	Right-handed alpha
Helix 69	AH6	B	736	756	Right-handed alpha

There are 15 sheets in PDB entry 8R60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	116	123	anti-parallel
Strand 3	A	144	149	parallel
Strand 4	A	154	156	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	679	680	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	496	499	anti-parallel
Strand 3	A	487	490	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	322	first strand
Strand 2	A	543	547	anti-parallel
Strand 3	A	560	566	anti-parallel
Strand 4	A	518	526	anti-parallel
Strand 5	A	502	506	anti-parallel
Strand 6	A	483	484	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	322	first strand
Strand 2	A	543	547	anti-parallel
Strand 3	A	560	566	anti-parallel
Strand 4	A	518	526	anti-parallel
Strand 5	A	569	570	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	379	first strand
Strand 2	B	364	367	parallel
Strand 3	B	356	359	anti-parallel
Strand 4	A	391	392	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	624	first strand
Strand 2	A	627	631	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	82	first strand
Strand 2	C	89	91	anti-parallel
Strand 3	C	57	59	anti-parallel
Strand 4	B	667	668	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	215	218	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	136	137	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	210	213	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	443	first strand
Strand 2	B	446	453	anti-parallel
Strand 3	B	298	302	anti-parallel
Strand 4	B	484	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R60

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R60