Analysis of interatomic Contacts of Structural Units in PDB entry:
8R6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R6E entry

There are 2 chains in PDB entry 8R6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1PRO 118
B
 LYS 3PRO 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8R6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
10 11Right-handed 310
Helix 3
AA3
A
12 16Right-handed 310
Helix 4
AA4
A
23 29Right-handed alpha
Helix 5
AA5
A
42 49Right-handed alpha
Helix 6
AA6
A
50 52Right-handed 310
Helix 7
AA7
A
54 60Right-handed alpha
Helix 8
AA8
A
64 72Right-handed alpha
Helix 9
AA9
A
99 111Right-handed alpha
Helix 10
AB1
A
112 117Right-handed 310
Helix 11
AB2
B
4 9Right-handed alpha
Helix 12
AB3
B
10 11Right-handed 310
Helix 13
AB4
B
12 16Right-handed 310
Helix 14
AB5
B
23 29Right-handed alpha
Helix 15
AB6
B
42 49Right-handed alpha
Helix 16
AB7
B
50 52Right-handed 310
Helix 17
AB8
B
54 60Right-handed alpha
Helix 18
AB9
B
64 72Right-handed alpha
Helix 19
AC1
B
99 111Right-handed alpha
Helix 20
AC2
B
112 117Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 8R6E.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 79first strand
Strand 2
A
82 92anti-parallel
Strand 3
B
82 92anti-parallel
Strand 4
B
73 79anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il