Analysis of interatomic Contacts of Structural Units in PDB entry:
8R6F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R6F entry

There are 74 chains in PDB entry 8R6F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Y	THR 8	ALA 131
X	GLY 2	ARG 141
E	ALA 2	ALA 261
O	ARG 22	THR 137
O	SER 139	LEU 151
W	VAL 2	TYR 130
b	VAL 2	LYS 84
e	GLY 6	GLU 61
k	LEU 12	ASP 210
B	PRO 23	HIS 232
V	GLN 2	GLN 81
a	THR 2	GLN 99
J	VAL 2	ALA 182
C	LYS 44	LEU 257
G	MET 1	GLU 230
H	ALA 4	PRO 187
h	ASP 94	ALA 120
L	ALA 2	GLY 147
N	GLY 2	GLU 142
n	MET 1	ARG 23
I	GLY 2	LYS 218
A	U 1	U 27
A	U 29	G 34
A	C 36	U 37
A	A 39	U 102
A	A 104	G 110
A	U 112	G 120
A	U 122	U 122
A	G 124	G 161
A	G 163	A 167
A	A 169	A 207
A	U 209	U 213
A	A 247	A 254
A	G 256	A 257
A	A 259	A 299
A	U 301	A 305
A	U 307	U 307
A	C 309	G 361
A	G 363	A 391
A	G 393	U 417
A	C 419	G 423
A	A 425	G 433
A	C 435	C 439
A	A 441	U 467
A	G 469	G 544
A	U 546	A 598
A	C 600	A 603
A	A 605	A 605
A	U 608	G 614
A	U 616	U 622
A	A 624	G 635
A	U 637	A 763
A	A 766	U 801
A	G 803	A 805
A	G 807	A 810
A	A 812	A 978
A	C 980	A 1003
A	C 1005	G 1013
A	C 1015	C 1083
A	U 1085	G 1099
A	C 1101	G 1107
A	U 1109	A 1121
A	G 1123	A 1130
A	G 1132	G 1158
A	G 1296	G 1299
A	A 1301	A 1305
A	U 1307	G 1309
A	C 1311	U 1636
A	G 1638	G 1647
A	C 1649	A 1760
A	G 1762	A 1773
A	C 1775	C 1783
A	G 1785	G 1791
A	C 1794	G 1811

There are102 helices in PDB entry 8R6F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Y	41	54	Right-handed alpha
Helix 2	AA2	Y	57	59	Right-handed 310
Helix 3	AA3	Y	84	92	Right-handed alpha
Helix 4	AA4	Y	93	100	Right-handed alpha
Helix 5	AA5	Y	109	122	Right-handed alpha
Helix 6	AA6	Y	125	129	Right-handed 310
Helix 7	AA7	X	9	21	Right-handed alpha
Helix 8	AA8	X	24	32	Right-handed alpha
Helix 9	AA9	X	33	38	Right-handed 310
Helix 10	AB1	X	88	93	Right-handed 310
Helix 11	AB2	X	129	134	Right-handed alpha
Helix 12	AB3	E	12	14	Right-handed 310
Helix 13	AB4	E	15	19	Right-handed 310
Helix 14	AB5	E	37	41	Right-handed 310
Helix 15	AB6	E	44	50	Right-handed alpha
Helix 16	AB7	E	57	67	Right-handed alpha
Helix 17	AB8	E	117	119	Right-handed 310
Helix 18	AB9	E	133	135	Right-handed 310
Helix 19	AC1	E	247	261	Right-handed alpha
Helix 20	AC2	O	64	68	Right-handed 310
Helix 21	AC3	O	70	89	Right-handed alpha
Helix 22	AC4	O	110	121	Right-handed alpha
Helix 23	AC5	W	5	21	Right-handed alpha
Helix 24	AC6	W	31	44	Right-handed alpha
Helix 25	AC7	W	82	84	Right-handed 310
Helix 26	AC8	W	85	94	Right-handed alpha
Helix 27	AC9	W	113	120	Right-handed alpha
Helix 28	AD1	b	3	7	Right-handed 310
Helix 29	AD2	b	13	18	Right-handed alpha
Helix 30	AD3	b	21	25	Right-handed 310
Helix 31	AD4	e	12	18	Right-handed alpha
Helix 32	AD5	e	32	45	Right-handed alpha
Helix 33	AD6	k	13	26	Right-handed alpha
Helix 34	AD7	k	54	71	Right-handed alpha
Helix 35	AD8	k	74	76	Right-handed 310
Helix 36	AD9	k	87	99	Right-handed alpha
Helix 37	AE1	k	134	142	Right-handed alpha
Helix 38	AE2	k	171	191	Right-handed alpha
Helix 39	AE3	k	203	207	Right-handed 310
Helix 40	AE4	B	56	61	Right-handed alpha
Helix 41	AE5	B	70	75	Right-handed alpha
Helix 42	AE6	B	76	80	Right-handed 310
Helix 43	AE7	B	106	114	Right-handed alpha
Helix 44	AE8	B	157	179	Right-handed alpha
Helix 45	AE9	B	180	189	Right-handed alpha
Helix 46	AF1	B	191	202	Right-handed alpha
Helix 47	AF2	B	224	231	Right-handed alpha
Helix 48	AF3	V	41	43	Right-handed 310
Helix 49	AF4	V	55	62	Right-handed alpha
Helix 50	AF5	V	63	80	Right-handed alpha
Helix 51	AF6	a	48	56	Right-handed alpha
Helix 52	AF7	a	74	81	Right-handed alpha
Helix 53	AF8	a	88	93	Right-handed alpha
Helix 54	AF9	J	3	8	Right-handed 310
Helix 55	AG1	J	22	37	Right-handed alpha
Helix 56	AG2	J	40	63	Right-handed alpha
Helix 57	AG3	J	68	85	Right-handed alpha
Helix 58	AG4	J	94	100	Right-handed alpha
Helix 59	AG5	J	102	108	Right-handed alpha
Helix 60	AG6	J	110	118	Right-handed alpha
Helix 61	AG7	J	123	133	Right-handed alpha
Helix 62	AG8	J	151	156	Right-handed alpha
Helix 63	AG9	J	164	168	Right-handed 310
Helix 64	AH1	J	172	182	Right-handed alpha
Helix 65	AH2	C	49	58	Right-handed alpha
Helix 66	AH3	C	63	69	Right-handed alpha
Helix 67	AH4	C	75	83	Right-handed alpha
Helix 68	AH5	C	130	145	Right-handed alpha
Helix 69	AH6	C	191	202	Right-handed alpha
Helix 70	AH7	C	216	230	Right-handed alpha
Helix 71	AH8	C	236	240	Right-handed 310
Helix 72	AH9	C	248	253	Right-handed alpha
Helix 73	AI1	G	20	26	Right-handed alpha
Helix 74	AI2	G	139	148	Right-handed alpha
Helix 75	AI3	G	155	160	Right-handed alpha
Helix 76	AI4	G	161	163	Right-handed 310
Helix 77	AI5	G	185	229	Right-handed alpha
Helix 78	AI6	H	17	31	Right-handed alpha
Helix 79	AI7	H	40	44	Right-handed 310
Helix 80	AI8	H	69	76	Right-handed alpha
Helix 81	AI9	H	76	88	Right-handed alpha
Helix 82	AJ1	H	114	117	Right-handed 310
Helix 83	AJ2	H	118	131	Right-handed alpha
Helix 84	AJ3	H	160	164	Right-handed 310
Helix 85	AJ4	H	166	177	Right-handed alpha
Helix 86	AJ5	h	99	109	Right-handed alpha
Helix 87	AJ6	L	46	51	Right-handed alpha
Helix 88	AJ7	N	29	44	Right-handed alpha
Helix 89	AJ8	N	46	57	Right-handed alpha
Helix 90	AJ9	N	62	68	Right-handed alpha
Helix 91	AK1	N	70	78	Right-handed alpha
Helix 92	AK2	N	85	105	Right-handed alpha
Helix 93	AK3	N	108	132	Right-handed alpha
Helix 94	AK4	n	2	22	Right-handed alpha
Helix 95	AK5	I	25	29	Right-handed 310
Helix 96	AK6	I	50	52	Right-handed 310
Helix 97	AK7	I	89	94	Right-handed alpha
Helix 98	AK8	I	107	119	Right-handed alpha
Helix 99	AK9	I	155	167	Right-handed alpha
Helix 100	AL1	I	173	182	Right-handed alpha
Helix 101	AL2	I	191	196	Right-handed alpha
Helix 102	AL3	I	204	218	Right-handed alpha

There are 32 sheets in PDB entry 8R6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	11	20	first strand
Strand 2	Y	25	33	anti-parallel
Strand 3	Y	74	82	anti-parallel
Strand 4	Y	61	68	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	127	128	first strand
Strand 2	X	119	124	anti-parallel
Strand 3	X	98	103	anti-parallel
Strand 4	X	46	53	anti-parallel
Strand 5	X	68	73	anti-parallel
Strand 6	X	79	83	anti-parallel
Strand 7	X	119	124	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	10	first strand
Strand 2	E	27	28	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	43	first strand
Strand 2	E	83	84	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	71	72	anti-parallel
Strand 3	E	89	91	anti-parallel
Strand 4	E	98	103	anti-parallel
Strand 5	E	109	114	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	137	141	anti-parallel
Strand 3	E	121	131	anti-parallel
Strand 4	E	159	163	anti-parallel
Strand 5	E	169	173	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	221	first strand
Strand 2	E	207	211	anti-parallel
Strand 3	E	192	199	anti-parallel
Strand 4	E	180	183	anti-parallel
Strand 5	E	225	227	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	52	57	first strand
Strand 2	O	40	45	anti-parallel
Strand 3	O	28	35	anti-parallel
Strand 4	O	92	98	parallel
Strand 5	O	125	131	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	24	27	first strand
Strand 2	W	60	64	anti-parallel
Strand 3	W	50	54	anti-parallel
Strand 4	H	136	143	anti-parallel
Strand 5	H	149	155	anti-parallel
Strand 6	H	181	185	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	72	74	first strand
Strand 2	W	123	129	anti-parallel
Strand 3	W	80	81	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	72	74	first strand
Strand 2	W	123	129	anti-parallel
Strand 3	W	101	106	anti-parallel
Strand 4	W	109	112	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	34	35	first strand
Strand 2	b	48	49	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	66	67	first strand
Strand 2	b	74	75	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	42	45	first strand
Strand 2	k	51	53	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	101	104	first strand
Strand 2	k	78	82	parallel
Strand 3	k	125	128	parallel
Strand 4	k	148	152	parallel
Strand 5	k	163	166	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	47	49	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	96	105	parallel
Strand 3	B	82	88	anti-parallel
Strand 4	B	68	69	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	82	88	anti-parallel
Strand 3	B	96	105	anti-parallel
Strand 4	B	207	219	anti-parallel
Strand 5	B	134	143	anti-parallel
Strand 6	B	120	128	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	32	39	first strand
Strand 2	V	45	54	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	20	22	first strand
Strand 2	a	29	31	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	36	43	first strand
Strand 2	a	66	73	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	141	142	first strand
Strand 2	J	136	138	anti-parallel
Strand 3	J	158	160	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	99	first strand
Strand 2	C	104	115	anti-parallel
Strand 3	C	120	128	anti-parallel
Strand 4	C	147	148	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	172	first strand
Strand 2	C	175	181	anti-parallel
Strand 3	C	206	211	anti-parallel
Strand 4	C	188	189	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	17	first strand
Strand 2	G	2	7	anti-parallel
Strand 3	G	108	117	parallel
Strand 4	G	49	57	anti-parallel
Strand 5	G	35	37	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	78	first strand
Strand 2	G	94	100	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	167	first strand
Strand 2	G	173	176	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	53	first strand
Strand 2	H	59	63	anti-parallel
Strand 3	H	91	95	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	96	98	first strand
Strand 2	h	116	118	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	71	78	first strand
Strand 2	L	84	95	anti-parallel
Strand 3	L	100	111	anti-parallel
Strand 4	L	138	144	parallel
Strand 5	L	123	128	anti-parallel
Strand 6	L	71	78	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	37	38	first strand
Strand 2	I	54	61	parallel
Strand 3	I	43	48	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	68	first strand
Strand 2	I	73	84	anti-parallel
Strand 3	I	102	106	anti-parallel
Strand 4	I	183	188	anti-parallel
Strand 5	I	200	202	anti-parallel
Strand 6	I	63	68	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R6F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R6F