Analysis of interatomic Contacts of Structural Units in PDB entry:
8R6R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R6R entry

There are 9 chains in PDB entry 8R6R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	PRO 236
C	SER 22	SER 1130
D	PHE 6	ALA 1281
E	SER 24	GLU 107
F	ARG 151	ASP 466
J	LEU 6	LEU 104
O	G 1	G 50
P	C 1	C 50

There are128 helices in PDB entry 8R6R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	46	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	151	156	Right-handed alpha
Helix 5	AA5	A	203	224	Right-handed alpha
Helix 6	AA6	B	30	46	Right-handed alpha
Helix 7	AA7	B	72	82	Right-handed alpha
Helix 8	AA8	B	108	110	Right-handed 310
Helix 9	AA9	B	203	224	Right-handed alpha
Helix 10	AB1	C	45	57	Right-handed alpha
Helix 11	AB2	C	58	68	Right-handed alpha
Helix 12	AB3	C	75	84	Right-handed alpha
Helix 13	AB4	C	109	116	Right-handed alpha
Helix 14	AB5	C	225	231	Right-handed alpha
Helix 15	AB6	C	238	243	Right-handed alpha
Helix 16	AB7	C	247	256	Right-handed alpha
Helix 17	AB8	C	260	273	Right-handed alpha
Helix 18	AB9	C	281	289	Right-handed alpha
Helix 19	AC1	C	300	312	Right-handed alpha
Helix 20	AC2	C	325	342	Right-handed alpha
Helix 21	AC3	C	371	395	Right-handed alpha
Helix 22	AC4	C	404	409	Right-handed alpha
Helix 23	AC5	C	411	425	Right-handed alpha
Helix 24	AC6	C	435	444	Right-handed alpha
Helix 25	AC7	C	461	465	Right-handed 310
Helix 26	AC8	C	467	471	Right-handed 310
Helix 27	AC9	C	523	529	Right-handed alpha
Helix 28	AD1	C	573	578	Right-handed 310
Helix 29	AD2	C	579	584	Right-handed alpha
Helix 30	AD3	C	587	591	Right-handed 310
Helix 31	AD4	C	592	604	Right-handed alpha
Helix 32	AD5	C	621	628	Right-handed alpha
Helix 33	AD6	C	721	725	Right-handed 310
Helix 34	AD7	C	730	735	Right-handed alpha
Helix 35	AD8	C	768	773	Right-handed 310
Helix 36	AD9	C	806	816	Right-handed alpha
Helix 37	AE1	C	847	849	Right-handed 310
Helix 38	AE2	C	891	895	Right-handed 310
Helix 39	AE3	C	911	917	Right-handed alpha
Helix 40	AE4	C	919	933	Right-handed alpha
Helix 41	AE5	C	944	948	Right-handed 310
Helix 42	AE6	C	951	955	Right-handed 310
Helix 43	AE7	C	972	982	Right-handed alpha
Helix 44	AE8	C	1060	1071	Right-handed alpha
Helix 45	AE9	C	1072	1081	Right-handed alpha
Helix 46	AF1	C	1086	1100	Right-handed alpha
Helix 47	AF2	C	1109	1122	Right-handed alpha
Helix 48	AF3	D	16	23	Right-handed alpha
Helix 49	AF4	D	48	53	Right-handed alpha
Helix 50	AF5	D	84	90	Right-handed 310
Helix 51	AF6	D	103	108	Right-handed alpha
Helix 52	AF7	D	112	119	Right-handed alpha
Helix 53	AF8	D	121	130	Right-handed alpha
Helix 54	AF9	D	141	144	Right-handed 310
Helix 55	AG1	D	148	151	Right-handed 310
Helix 56	AG2	D	152	184	Right-handed alpha
Helix 57	AG3	D	190	195	Right-handed alpha
Helix 58	AG4	D	195	227	Right-handed alpha
Helix 59	AG5	D	237	249	Right-handed alpha
Helix 60	AG6	D	257	268	Right-handed alpha
Helix 61	AG7	D	269	284	Right-handed alpha
Helix 62	AG8	D	286	300	Right-handed alpha
Helix 63	AG9	D	308	311	Right-handed 310
Helix 64	AH1	D	321	325	Right-handed 310
Helix 65	AH2	D	331	333	Right-handed 310
Helix 66	AH3	D	338	361	Right-handed alpha
Helix 67	AH4	D	363	383	Right-handed alpha
Helix 68	AH5	D	402	406	Right-handed 310
Helix 69	AH6	D	445	463	Right-handed alpha
Helix 70	AH7	D	468	478	Right-handed alpha
Helix 71	AH8	D	480	482	Right-handed 310
Helix 72	AH9	D	483	492	Right-handed alpha
Helix 73	AI1	D	505	507	Right-handed 310
Helix 74	AI2	D	528	533	Right-handed alpha
Helix 75	AI3	D	548	558	Right-handed alpha
Helix 76	AI4	D	560	564	Right-handed 310
Helix 77	AI5	D	579	590	Right-handed alpha
Helix 78	AI6	D	614	624	Right-handed alpha
Helix 79	AI7	D	643	651	Right-handed alpha
Helix 80	AI8	D	667	674	Right-handed alpha
Helix 81	AI9	D	688	703	Right-handed alpha
Helix 82	AJ1	D	704	724	Right-handed alpha
Helix 83	AJ2	D	740	761	Right-handed alpha
Helix 84	AJ3	D	765	792	Right-handed alpha
Helix 85	AJ4	D	796	804	Right-handed alpha
Helix 86	AJ5	D	809	818	Right-handed alpha
Helix 87	AJ6	D	844	880	Right-handed alpha
Helix 88	AJ7	D	914	919	Right-handed alpha
Helix 89	AJ8	D	944	954	Right-handed alpha
Helix 90	AJ9	D	975	979	Right-handed alpha
Helix 91	AK1	D	993	1004	Right-handed alpha
Helix 92	AK2	D	1028	1037	Right-handed alpha
Helix 93	AK3	D	1118	1126	Right-handed alpha
Helix 94	AK4	D	1127	1146	Right-handed alpha
Helix 95	AK5	D	1151	1161	Right-handed alpha
Helix 96	AK6	D	1184	1198	Right-handed alpha
Helix 97	AK7	D	1210	1217	Right-handed alpha
Helix 98	AK8	D	1220	1228	Right-handed alpha
Helix 99	AK9	D	1229	1241	Right-handed alpha
Helix 100	AL1	D	1248	1256	Right-handed alpha
Helix 101	AL2	D	1261	1264	Right-handed 310
Helix 102	AL3	D	1265	1270	Right-handed alpha
Helix 103	AL4	D	1276	1281	Right-handed alpha
Helix 104	AL5	E	30	34	Right-handed 310
Helix 105	AL6	E	36	42	Right-handed alpha
Helix 106	AL7	E	46	66	Right-handed alpha
Helix 107	AL8	E	87	98	Right-handed alpha
Helix 108	AL9	F	152	160	Right-handed alpha
Helix 109	AM1	F	161	163	Right-handed 310
Helix 110	AM2	F	164	173	Right-handed alpha
Helix 111	AM3	F	180	183	Right-handed 310
Helix 112	AM4	F	184	206	Right-handed alpha
Helix 113	AM5	F	212	236	Right-handed alpha
Helix 114	AM6	F	237	246	Right-handed alpha
Helix 115	AM7	F	247	249	Right-handed 310
Helix 116	AM8	F	254	271	Right-handed alpha
Helix 117	AM9	F	274	278	Right-handed 310
Helix 118	AN1	F	280	300	Right-handed alpha
Helix 119	AN2	F	307	329	Right-handed alpha
Helix 120	AN3	F	333	342	Right-handed alpha
Helix 121	AN4	F	344	355	Right-handed alpha
Helix 122	AN5	F	384	398	Right-handed alpha
Helix 123	AN6	F	407	417	Right-handed alpha
Helix 124	AN7	F	426	432	Right-handed alpha
Helix 125	AN8	F	437	454	Right-handed alpha
Helix 126	AN9	F	454	463	Right-handed alpha
Helix 127	AO1	J	80	87	Right-handed alpha
Helix 128	AO2	J	90	101	Right-handed alpha

There are 44 sheets in PDB entry 8R6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	180	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	186	198	anti-parallel
Strand 4	B	171	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	48	56	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel
Strand 3	C	617	618	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	103	first strand
Strand 2	C	122	132	anti-parallel
Strand 3	C	138	148	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	488	490	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	182	first strand
Strand 2	C	189	196	anti-parallel
Strand 3	C	203	206	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	223	224	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	347	first strand
Strand 2	C	353	355	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	510	anti-parallel
Strand 3	C	515	522	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	510	anti-parallel
Strand 3	C	569	571	anti-parallel
Strand 4	C	532	533	parallel
Strand 5	C	549	554	anti-parallel
Strand 6	C	558	563	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	692	695	anti-parallel
Strand 3	C	678	679	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	700	first strand
Strand 2	C	703	704	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1014	1023	anti-parallel
Strand 3	C	875	877	anti-parallel
Strand 4	C	884	890	anti-parallel
Strand 5	C	726	729	parallel
Strand 6	C	906	908	anti-parallel
Strand 7	C	708	714	parallel
Strand 8	C	1014	1023	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	750	first strand
Strand 2	C	858	868	anti-parallel
Strand 3	C	836	845	anti-parallel
Strand 4	C	786	787	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	796	797	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	500	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1057	1059	first strand
Strand 2	D	420	422	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1124	1129	first strand
Strand 2	D	9	14	anti-parallel
Strand 3	D	1243	1245	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	102	parallel
Strand 3	D	313	319	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	661	666	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	899	first strand
Strand 2	D	958	961	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	901	902	first strand
Strand 2	D	910	911	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	928	929	first strand
Strand 2	D	935	937	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1044	1045	first strand
Strand 2	D	1116	1117	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1077	1078	first strand
Strand 2	D	1065	1069	anti-parallel
Strand 3	D	1052	1055	anti-parallel
Strand 4	D	1104	1106	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1089	1090	first strand
Strand 2	D	1098	1099	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1183	first strand
Strand 2	D	1165	1171	anti-parallel
Strand 3	D	1202	1206	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1275	first strand
Strand 2	E	101	104	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	378	379	first strand
Strand 2	J	7	8	parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	44	first strand
Strand 2	J	28	34	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R6R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R6R