Analysis of interatomic Contacts of Structural Units in PDB entry:
8R6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R6U entry

There are 5 chains in PDB entry 8R6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 1612
P
 A 1 G 16
T
 C 10 U 26
G
 A 1 C 4
E
 C 2 A 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 76 helices in PDB entry 8R6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed alpha
Helix 2
AA2
A
71 76Right-handed 310
Helix 3
AA3
A
77 85Right-handed alpha
Helix 4
AA4
A
134 149Right-handed alpha
Helix 5
AA5
A
149 157Right-handed alpha
Helix 6
AA6
A
184 209Right-handed alpha
Helix 7
AA7
A
217 234Right-handed alpha
Helix 8
AA8
A
237 245Right-handed alpha
Helix 9
AA9
A
249 259Right-handed alpha
Helix 10
AB1
A
262 285Right-handed alpha
Helix 11
AB2
A
292 317Right-handed alpha
Helix 12
AB3
A
350 355Right-handed alpha
Helix 13
AB4
A
359 375Right-handed alpha
Helix 14
AB5
A
383 393Right-handed alpha
Helix 15
AB6
A
416 425Right-handed alpha
Helix 16
AB7
A
436 446Right-handed alpha
Helix 17
AB8
A
457 466Right-handed alpha
Helix 18
AB9
A
477 491Right-handed alpha
Helix 19
AC1
A
496 510Right-handed alpha
Helix 20
AC2
A
512 532Right-handed alpha
Helix 21
AC3
A
573 575Right-handed 310
Helix 22
AC4
A
606 611Right-handed alpha
Helix 23
AC5
A
611 627Right-handed alpha
Helix 24
AC6
A
639 655Right-handed alpha
Helix 25
AC7
A
656 665Right-handed alpha
Helix 26
AC8
A
665 671Right-handed alpha
Helix 27
AC9
A
672 675Right-handed 310
Helix 28
AD1
A
682 689Right-handed 310
Helix 29
AD2
A
696 716Right-handed alpha
Helix 30
AD3
A
742 749Right-handed alpha
Helix 31
AD4
A
750 756Right-handed 310
Helix 32
AD5
A
763 766Right-handed 310
Helix 33
AD6
A
767 776Right-handed alpha
Helix 34
AD7
A
777 781Right-handed 310
Helix 35
AD8
A
802 822Right-handed alpha
Helix 36
AD9
A
824 839Right-handed alpha
Helix 37
AE1
A
841 846Right-handed alpha
Helix 38
AE2
A
860 865Right-handed alpha
Helix 39
AE3
A
874 885Right-handed alpha
Helix 40
AE4
A
889 903Right-handed alpha
Helix 41
AE5
A
926 945Right-handed alpha
Helix 42
AE6
A
956 974Right-handed alpha
Helix 43
AE7
A
988 993Right-handed alpha
Helix 44
AE8
A
994 1005Right-handed alpha
Helix 45
AE9
A
1010 1020Right-handed alpha
Helix 46
AF1
A
1021 1023Right-handed 310
Helix 47
AF2
A
1029 1039Right-handed alpha
Helix 48
AF3
A
1046 1058Right-handed alpha
Helix 49
AF4
A
1083 1108Right-handed alpha
Helix 50
AF5
A
1109 1113Right-handed 310
Helix 51
AF6
A
1138 1155Right-handed alpha
Helix 52
AF7
A
1155 1160Right-handed alpha
Helix 53
AF8
A
1161 1164Right-handed 310
Helix 54
AF9
A
1194 1200Right-handed alpha
Helix 55
AG1
A
1210 1212Right-handed 310
Helix 56
AG2
A
1213 1228Right-handed alpha
Helix 57
AG3
A
1231 1250Right-handed alpha
Helix 58
AG4
A
1257 1266Right-handed alpha
Helix 59
AG5
A
1280 1284Right-handed 310
Helix 60
AG6
A
1288 1297Right-handed alpha
Helix 61
AG7
A
1302 1315Right-handed alpha
Helix 62
AG8
A
1345 1356Right-handed alpha
Helix 63
AG9
A
1360 1368Right-handed alpha
Helix 64
AH1
A
1369 1373Right-handed 310
Helix 65
AH2
A
1378 1390Right-handed alpha
Helix 66
AH3
A
1392 1397Right-handed alpha
Helix 67
AH4
A
1403 1411Right-handed alpha
Helix 68
AH5
A
1437 1448Right-handed alpha
Helix 69
AH6
A
1449 1451Right-handed 310
Helix 70
AH7
A
1457 1465Right-handed alpha
Helix 71
AH8
A
1469 1478Right-handed alpha
Helix 72
AH9
A
1512 1522Right-handed alpha
Helix 73
AI1
A
1534 1546Right-handed alpha
Helix 74
AI2
A
1551 1559Right-handed alpha
Helix 75
AI3
A
1563 1575Right-handed alpha
Helix 76
AI4
A
1595 1604Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 8R6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
177 179anti-parallel
Strand 3
A
165 172anti-parallel
Strand 4
A
122 129parallel
Strand 5
A
113 116anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
66 70anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
577 578anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
541 545anti-parallel
Strand 3
A
552 557anti-parallel
Strand 4
A
564 571anti-parallel
Strand 5
A
593 595anti-parallel
Strand 6
A
588 589anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
541 545anti-parallel
Strand 3
A
552 557anti-parallel
Strand 4
A
564 571anti-parallel
Strand 5
A
599 601anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 722first strand
Strand 2
A
727 730anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 851first strand
Strand 2
A
872 873anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 924first strand
Strand 2
A
908 912anti-parallel
Strand 3
A
1024 1027parallel
Strand 4
A
1071 1074anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1117 1123first strand
Strand 2
A
1127 1134anti-parallel
Strand 3
A
978 987anti-parallel
Strand 4
A
1166 1167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1117 1123first strand
Strand 2
A
1127 1134anti-parallel
Strand 3
A
978 987anti-parallel
Strand 4
A
1172 1175anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1178 1180first strand
Strand 2
A
1185 1187anti-parallel
Strand 3
A
1190 1192anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1338 1340first strand
Strand 2
A
1421 1423anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1486 1488first strand
Strand 2
A
1609 1611anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1496 1503first strand
Strand 2
A
1579 1585anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il