Analysis of interatomic Contacts of Structural Units in PDB entry:
8R6X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R6X entry

There are 3 chains in PDB entry 8R6X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 70ASP 291
B
 ALA 98PHE 316
C
 GLY 1GLN 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8R6X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 79Right-handed alpha
Helix 2
AA2
A
110 118Right-handed alpha
Helix 3
AA3
A
162 166Right-handed 310
Helix 4
AA4
B
104 106Right-handed 310
Helix 5
AA5
B
158 168Right-handed alpha
Helix 6
AA6
B
218 223Right-handed alpha
Helix 7
AA7
B
233 237Right-handed 310
Helix 8
AA8
C
43 47Right-handed 310
Helix 9
AA9
C
62 68Right-handed 310
Helix 10
AB1
C
92 96Right-handed 310
Helix 11
AB2
C
98 103Right-handed alpha
Helix 12
AB3
C
143 148Right-handed alpha
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There are 10 sheets in PDB entry 8R6X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 90first strand
Strand 2
A
241 254anti-parallel
Strand 3
A
122 134anti-parallel
Strand 4
A
183 186anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 90first strand
Strand 2
A
241 254anti-parallel
Strand 3
A
122 134anti-parallel
Strand 4
A
195 196anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
96 97anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
226 230anti-parallel
Strand 3
A
144 150anti-parallel
Strand 4
A
172 176anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
261 266parallel
Strand 3
B
172 181anti-parallel
Strand 4
B
303 309anti-parallel
Strand 5
B
138 140anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
303 309anti-parallel
Strand 3
B
172 181anti-parallel
Strand 4
B
312 315anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
147 150anti-parallel
Strand 3
B
283 294anti-parallel
Strand 4
B
188 197anti-parallel
Strand 5
B
252 255anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 71first strand
Strand 2
C
210 213anti-parallel
Strand 3
C
108 120anti-parallel
Strand 4
C
170 173anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 165first strand
Strand 2
C
108 120anti-parallel
Strand 3
C
216 224anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 84first strand
Strand 2
C
191 201anti-parallel
Strand 3
C
126 134anti-parallel
Strand 4
C
151 156anti-parallel
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