Analysis of interatomic Contacts of Structural Units in PDB entry:
8R6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R6Y entry

There are 5 chains in PDB entry 8R6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 2065
P	A 1	G 16
T	C 10	U 24
G	A 2	A 4
C	A 2	A 4

There are 85 helices in PDB entry 8R6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	9	Right-handed alpha
Helix 2	AA2	A	72	76	Right-handed 310
Helix 3	AA3	A	77	84	Right-handed alpha
Helix 4	AA4	A	94	99	Right-handed alpha
Helix 5	AA5	A	134	158	Right-handed alpha
Helix 6	AA6	A	184	206	Right-handed alpha
Helix 7	AA7	A	219	234	Right-handed alpha
Helix 8	AA8	A	237	245	Right-handed alpha
Helix 9	AA9	A	249	259	Right-handed alpha
Helix 10	AB1	A	262	285	Right-handed alpha
Helix 11	AB2	A	292	318	Right-handed alpha
Helix 12	AB3	A	352	357	Right-handed alpha
Helix 13	AB4	A	359	374	Right-handed alpha
Helix 14	AB5	A	383	393	Right-handed alpha
Helix 15	AB6	A	416	426	Right-handed alpha
Helix 16	AB7	A	436	447	Right-handed alpha
Helix 17	AB8	A	457	465	Right-handed alpha
Helix 18	AB9	A	477	491	Right-handed alpha
Helix 19	AC1	A	496	511	Right-handed alpha
Helix 20	AC2	A	512	531	Right-handed alpha
Helix 21	AC3	A	605	611	Right-handed alpha
Helix 22	AC4	A	611	627	Right-handed alpha
Helix 23	AC5	A	638	655	Right-handed alpha
Helix 24	AC6	A	656	671	Right-handed alpha
Helix 25	AC7	A	672	675	Right-handed 310
Helix 26	AC8	A	682	685	Right-handed 310
Helix 27	AC9	A	686	691	Right-handed alpha
Helix 28	AD1	A	696	716	Right-handed alpha
Helix 29	AD2	A	742	750	Right-handed alpha
Helix 30	AD3	A	751	755	Right-handed 310
Helix 31	AD4	A	767	780	Right-handed alpha
Helix 32	AD5	A	784	788	Right-handed 310
Helix 33	AD6	A	802	821	Right-handed alpha
Helix 34	AD7	A	824	839	Right-handed alpha
Helix 35	AD8	A	841	846	Right-handed alpha
Helix 36	AD9	A	855	859	Right-handed 310
Helix 37	AE1	A	874	885	Right-handed alpha
Helix 38	AE2	A	888	904	Right-handed alpha
Helix 39	AE3	A	926	945	Right-handed alpha
Helix 40	AE4	A	956	960	Right-handed 310
Helix 41	AE5	A	964	973	Right-handed alpha
Helix 42	AE6	A	994	1005	Right-handed alpha
Helix 43	AE7	A	1010	1020	Right-handed alpha
Helix 44	AE8	A	1029	1039	Right-handed alpha
Helix 45	AE9	A	1046	1057	Right-handed alpha
Helix 46	AF1	A	1083	1108	Right-handed alpha
Helix 47	AF2	A	1139	1155	Right-handed alpha
Helix 48	AF3	A	1155	1160	Right-handed alpha
Helix 49	AF4	A	1195	1200	Right-handed alpha
Helix 50	AF5	A	1210	1228	Right-handed alpha
Helix 51	AF6	A	1231	1250	Right-handed alpha
Helix 52	AF7	A	1257	1266	Right-handed alpha
Helix 53	AF8	A	1288	1300	Right-handed alpha
Helix 54	AF9	A	1301	1315	Right-handed alpha
Helix 55	AG1	A	1344	1356	Right-handed alpha
Helix 56	AG2	A	1360	1368	Right-handed alpha
Helix 57	AG3	A	1369	1374	Right-handed 310
Helix 58	AG4	A	1378	1391	Right-handed alpha
Helix 59	AG5	A	1394	1399	Right-handed alpha
Helix 60	AG6	A	1403	1412	Right-handed alpha
Helix 61	AG7	A	1437	1447	Right-handed alpha
Helix 62	AG8	A	1448	1452	Right-handed 310
Helix 63	AG9	A	1457	1465	Right-handed alpha
Helix 64	AH1	A	1467	1479	Right-handed alpha
Helix 65	AH2	A	1512	1523	Right-handed alpha
Helix 66	AH3	A	1530	1545	Right-handed alpha
Helix 67	AH4	A	1551	1559	Right-handed alpha
Helix 68	AH5	A	1563	1574	Right-handed alpha
Helix 69	AH6	A	1596	1604	Right-handed alpha
Helix 70	AH7	A	1616	1624	Right-handed alpha
Helix 71	AH8	A	1624	1638	Right-handed alpha
Helix 72	AH9	A	1642	1657	Right-handed alpha
Helix 73	AI1	A	1669	1683	Right-handed alpha
Helix 74	AI2	A	1687	1696	Right-handed alpha
Helix 75	AI3	A	1758	1773	Right-handed alpha
Helix 76	AI4	A	1820	1824	Right-handed 310
Helix 77	AI5	A	1858	1868	Right-handed alpha
Helix 78	AI6	A	1872	1876	Right-handed 310
Helix 79	AI7	A	1890	1903	Right-handed alpha
Helix 80	AI8	A	1914	1931	Right-handed alpha
Helix 81	AI9	A	1952	1957	Right-handed alpha
Helix 82	AJ1	A	1997	2005	Right-handed alpha
Helix 83	AJ2	A	2015	2027	Right-handed alpha
Helix 84	AJ3	A	2027	2038	Right-handed alpha
Helix 85	AJ4	A	2041	2055	Right-handed alpha

There are 19 sheets in PDB entry 8R6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	177	179	anti-parallel
Strand 3	A	165	172	anti-parallel
Strand 4	A	122	129	parallel
Strand 5	A	113	116	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	45	49	anti-parallel
Strand 3	A	66	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	577	578	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	411	first strand
Strand 2	A	541	545	anti-parallel
Strand 3	A	552	557	anti-parallel
Strand 4	A	564	570	anti-parallel
Strand 5	A	593	595	anti-parallel
Strand 6	A	588	590	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	411	first strand
Strand 2	A	541	545	anti-parallel
Strand 3	A	552	557	anti-parallel
Strand 4	A	564	570	anti-parallel
Strand 5	A	599	601	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	721	first strand
Strand 2	A	728	730	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	851	first strand
Strand 2	A	872	873	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	925	first strand
Strand 2	A	907	913	anti-parallel
Strand 3	A	1025	1027	parallel
Strand 4	A	1071	1073	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1123	first strand
Strand 2	A	1128	1134	anti-parallel
Strand 3	A	978	984	anti-parallel
Strand 4	A	1172	1175	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1178	1180	first strand
Strand 2	A	1185	1187	anti-parallel
Strand 3	A	1190	1192	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1328	1329	first strand
Strand 2	A	1333	1334	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1337	1339	first strand
Strand 2	A	1421	1423	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1496	1497	first strand
Strand 2	A	1584	1585	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1500	1502	first strand
Strand 2	A	1579	1581	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1699	1705	first strand
Strand 2	A	1721	1729	anti-parallel
Strand 3	A	1733	1740	anti-parallel
Strand 4	A	1745	1752	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1709	1712	first strand
Strand 2	A	1715	1719	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1794	1796	first strand
Strand 2	A	1789	1791	anti-parallel
Strand 3	A	1804	1805	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1827	1829	first strand
Strand 2	A	1832	1834	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2039	2040	first strand
Strand 2	A	2063	2064	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R6Y