Analysis of interatomic Contacts of Structural Units in PDB entry:
8R72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R72 entry

There are 2 chains in PDB entry 8R72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 20	ILE 635
B	GLU 20	ILE 635

There are 51 helices in PDB entry 8R72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	28	Right-handed alpha
Helix 2	AA2	A	29	37	Right-handed alpha
Helix 3	AA3	A	51	60	Right-handed alpha
Helix 4	AA4	A	61	72	Right-handed alpha
Helix 5	AA5	A	82	93	Right-handed alpha
Helix 6	AA6	A	95	120	Right-handed alpha
Helix 7	AA7	A	124	138	Right-handed alpha
Helix 8	AA8	A	146	150	Right-handed 310
Helix 9	AA9	A	165	190	Right-handed alpha
Helix 10	AB1	A	191	205	Right-handed alpha
Helix 11	AB2	A	205	212	Right-handed alpha
Helix 12	AB3	A	215	219	Right-handed 310
Helix 13	AB4	A	230	247	Right-handed alpha
Helix 14	AB5	A	249	271	Right-handed alpha
Helix 15	AB6	A	283	286	Right-handed 310
Helix 16	AB7	A	287	302	Right-handed alpha
Helix 17	AB8	A	311	324	Right-handed alpha
Helix 18	AB9	A	344	356	Right-handed alpha
Helix 19	AC1	A	357	368	Right-handed alpha
Helix 20	AC2	A	380	397	Right-handed alpha
Helix 21	AC3	A	463	467	Right-handed 310
Helix 22	AC4	A	470	482	Right-handed 310
Helix 23	AC5	A	487	490	Right-handed 310
Helix 24	AC6	A	517	520	Right-handed 310
Helix 25	AC7	A	521	524	Right-handed 310
Helix 26	AC8	A	601	609	Right-handed alpha
Helix 27	AC9	B	22	27	Right-handed alpha
Helix 28	AD1	B	29	37	Right-handed alpha
Helix 29	AD2	B	51	60	Right-handed alpha
Helix 30	AD3	B	61	72	Right-handed alpha
Helix 31	AD4	B	82	93	Right-handed alpha
Helix 32	AD5	B	95	120	Right-handed alpha
Helix 33	AD6	B	124	138	Right-handed alpha
Helix 34	AD7	B	146	150	Right-handed 310
Helix 35	AD8	B	165	190	Right-handed alpha
Helix 36	AD9	B	191	205	Right-handed alpha
Helix 37	AE1	B	205	212	Right-handed alpha
Helix 38	AE2	B	215	219	Right-handed 310
Helix 39	AE3	B	230	247	Right-handed alpha
Helix 40	AE4	B	249	269	Right-handed alpha
Helix 41	AE5	B	282	286	Right-handed 310
Helix 42	AE6	B	287	301	Right-handed alpha
Helix 43	AE7	B	311	324	Right-handed alpha
Helix 44	AE8	B	344	356	Right-handed alpha
Helix 45	AE9	B	357	369	Right-handed alpha
Helix 46	AF1	B	380	395	Right-handed alpha
Helix 47	AF2	B	474	482	Right-handed 310
Helix 48	AF3	B	487	490	Right-handed 310
Helix 49	AF4	B	517	520	Right-handed 310
Helix 50	AF5	B	521	524	Right-handed 310
Helix 51	AF6	B	601	606	Right-handed alpha

There are 10 sheets in PDB entry 8R72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	330	331	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	414	418	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	444	448	anti-parallel
Strand 5	A	451	454	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	495	499	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	486	first strand
Strand 2	A	556	561	anti-parallel
Strand 3	A	611	618	anti-parallel
Strand 4	A	591	598	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	506	first strand
Strand 2	A	511	515	anti-parallel
Strand 3	A	526	535	anti-parallel
Strand 4	A	539	548	anti-parallel
Strand 5	A	625	634	anti-parallel
Strand 6	A	580	585	anti-parallel
Strand 7	A	572	577	anti-parallel
Strand 8	A	564	569	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	330	331	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	409	first strand
Strand 2	B	414	418	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	444	448	anti-parallel
Strand 5	B	451	454	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	495	499	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	486	first strand
Strand 2	B	556	561	anti-parallel
Strand 3	B	611	618	anti-parallel
Strand 4	B	591	598	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	506	first strand
Strand 2	B	511	515	anti-parallel
Strand 3	B	526	535	anti-parallel
Strand 4	B	539	548	anti-parallel
Strand 5	B	625	634	anti-parallel
Strand 6	B	580	585	anti-parallel
Strand 7	B	572	577	anti-parallel
Strand 8	B	564	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R72

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R72