Analysis of interatomic Contacts of Structural Units in PDB entry:
8R7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R7D entry

There are 4 chains in PDB entry 8R7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 26PRO 94
B
 GLY 23HIS 132
C
 ARG 26PRO 94
D
 GLY 23GLU 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8R7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 52Right-handed alpha
Helix 2
AA2
A
75 85Right-handed alpha
Helix 3
AA3
B
86 101Right-handed alpha
Helix 4
AA4
B
110 114Right-handed 310
Helix 5
AA5
C
41 52Right-handed alpha
Helix 6
AA6
C
75 85Right-handed alpha
Helix 7
AA7
D
86 101Right-handed alpha
Helix 8
AA8
D
110 114Right-handed 310
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There are 4 sheets in PDB entry 8R7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
67 72anti-parallel
Strand 4
A
56 62anti-parallel
Strand 5
B
37 44anti-parallel
Strand 6
B
25 31anti-parallel
Strand 7
B
82 85anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 55first strand
Strand 2
B
62 70anti-parallel
Strand 3
B
73 75anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 92first strand
Strand 2
C
29 34anti-parallel
Strand 3
C
67 72anti-parallel
Strand 4
C
56 62anti-parallel
Strand 5
D
37 44anti-parallel
Strand 6
D
25 31anti-parallel
Strand 7
D
82 85anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 53first strand
Strand 2
D
63 70anti-parallel
Strand 3
D
73 75anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il