Analysis of interatomic Contacts of Structural Units in PDB entry:
8R7T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R7T entry

There are 6 chains in PDB entry 8R7T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 13LEU 211
A
 SER 13LEU 211
C
 VAL 9VAL 9
C
 ALA 11ALA 11
D
 VAL 9VAL 9
D
 ALA 11ALA 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8R7T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 20Right-handed 310
Helix 2
AA2
B
25 31Right-handed alpha
Helix 3
AA3
B
68 81Right-handed alpha
Helix 4
AA4
B
163 167Right-handed 310
Helix 5
AA5
B
178 190Right-handed alpha
Helix 6
AA6
A
16 20Right-handed 310
Helix 7
AA7
A
25 31Right-handed alpha
Helix 8
AA8
A
68 81Right-handed alpha
Helix 9
AA9
A
163 167Right-handed 310
Helix 10
AB1
A
178 190Right-handed alpha
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There are 3 sheets in PDB entry 8R7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 101first strand
Strand 2
B
105 108anti-parallel
Strand 3
B
156 159anti-parallel
Strand 4
B
141 144anti-parallel
Strand 5
B
172 177anti-parallel
Strand 6
B
54 63anti-parallel
Strand 7
B
44 51anti-parallel
Strand 8
B
203 210anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
88 89anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
105 108anti-parallel
Strand 3
A
156 159anti-parallel
Strand 4
A
141 144anti-parallel
Strand 5
A
172 177anti-parallel
Strand 6
A
54 63anti-parallel
Strand 7
A
44 51anti-parallel
Strand 8
A
203 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il