Analysis of interatomic Contacts of Structural Units in PDB entry:
8R7Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R7Y entry

There are 8 chains in PDB entry 8R7Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1	ASP 312
B	ASP 2	ASP 312
C	THR 1	ASP 312
D	THR 1	ASP 312
E	A 1	T 18
F	A 1	T 18
G	A 1	T 18
H	A 1	T 18

There are 63 helices in PDB entry 8R7Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	19	Right-handed alpha
Helix 2	AA2	A	22	30	Right-handed alpha
Helix 3	AA3	A	33	47	Right-handed alpha
Helix 4	AA4	A	62	72	Right-handed alpha
Helix 5	AA5	A	86	106	Right-handed alpha
Helix 6	AA6	A	117	126	Right-handed alpha
Helix 7	AA7	A	152	164	Right-handed alpha
Helix 8	AA8	A	179	188	Right-handed alpha
Helix 9	AA9	A	189	202	Right-handed alpha
Helix 10	AB1	A	215	221	Right-handed alpha
Helix 11	AB2	A	222	225	Right-handed 310
Helix 12	AB3	A	226	236	Right-handed alpha
Helix 13	AB4	A	253	258	Right-handed alpha
Helix 14	AB5	A	265	271	Right-handed 310
Helix 15	AB6	A	284	293	Right-handed alpha
Helix 16	AB7	A	303	310	Right-handed alpha
Helix 17	AB8	B	4	19	Right-handed alpha
Helix 18	AB9	B	22	30	Right-handed alpha
Helix 19	AC1	B	33	48	Right-handed alpha
Helix 20	AC2	B	56	72	Right-handed alpha
Helix 21	AC3	B	86	106	Right-handed alpha
Helix 22	AC4	B	117	126	Right-handed alpha
Helix 23	AC5	B	152	164	Right-handed alpha
Helix 24	AC6	B	179	188	Right-handed alpha
Helix 25	AC7	B	189	202	Right-handed alpha
Helix 26	AC8	B	216	221	Right-handed alpha
Helix 27	AC9	B	225	236	Right-handed alpha
Helix 28	AD1	B	253	258	Right-handed alpha
Helix 29	AD2	B	264	271	Right-handed 310
Helix 30	AD3	B	280	282	Right-handed 310
Helix 31	AD4	B	283	293	Right-handed alpha
Helix 32	AD5	B	303	311	Right-handed alpha
Helix 33	AD6	C	3	20	Right-handed alpha
Helix 34	AD7	C	22	30	Right-handed alpha
Helix 35	AD8	C	33	48	Right-handed alpha
Helix 36	AD9	C	56	72	Right-handed alpha
Helix 37	AE1	C	86	106	Right-handed alpha
Helix 38	AE2	C	117	126	Right-handed alpha
Helix 39	AE3	C	152	164	Right-handed alpha
Helix 40	AE4	C	179	188	Right-handed alpha
Helix 41	AE5	C	189	202	Right-handed alpha
Helix 42	AE6	C	216	221	Right-handed alpha
Helix 43	AE7	C	225	236	Right-handed alpha
Helix 44	AE8	C	253	259	Right-handed alpha
Helix 45	AE9	C	264	271	Right-handed alpha
Helix 46	AF1	C	280	293	Right-handed alpha
Helix 47	AF2	C	303	312	Right-handed alpha
Helix 48	AF3	D	2	19	Right-handed alpha
Helix 49	AF4	D	22	30	Right-handed alpha
Helix 50	AF5	D	33	48	Right-handed alpha
Helix 51	AF6	D	67	72	Right-handed alpha
Helix 52	AF7	D	86	106	Right-handed alpha
Helix 53	AF8	D	117	126	Right-handed alpha
Helix 54	AF9	D	152	164	Right-handed alpha
Helix 55	AG1	D	179	189	Right-handed alpha
Helix 56	AG2	D	189	202	Right-handed alpha
Helix 57	AG3	D	211	221	Right-handed alpha
Helix 58	AG4	D	225	235	Right-handed alpha
Helix 59	AG5	D	253	258	Right-handed alpha
Helix 60	AG6	D	264	271	Right-handed 310
Helix 61	AG7	D	280	282	Right-handed 310
Helix 62	AG8	D	283	293	Right-handed alpha
Helix 63	AG9	D	303	311	Right-handed alpha

There are 10 sheets in PDB entry 8R7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	B	50	54	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	298	302	parallel
Strand 3	A	273	277	parallel
Strand 4	A	204	207	parallel
Strand 5	A	111	114	parallel
Strand 6	A	136	139	parallel
Strand 7	A	168	169	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	238	240	anti-parallel
Strand 3	A	243	245	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	298	302	parallel
Strand 3	B	273	277	parallel
Strand 4	B	204	207	parallel
Strand 5	B	111	114	parallel
Strand 6	B	136	139	parallel
Strand 7	B	168	169	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	240	first strand
Strand 2	B	243	244	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	53	first strand
Strand 2	D	51	54	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	80	first strand
Strand 2	C	298	302	parallel
Strand 3	C	273	277	parallel
Strand 4	C	204	207	parallel
Strand 5	C	111	114	parallel
Strand 6	C	136	139	parallel
Strand 7	C	168	169	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	243	244	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	298	302	parallel
Strand 3	D	273	277	parallel
Strand 4	D	204	207	parallel
Strand 5	D	111	114	parallel
Strand 6	D	136	139	parallel
Strand 7	D	168	169	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	240	first strand
Strand 2	D	243	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R7Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R7Y