Analysis of interatomic Contacts of Structural Units in PDB entry:
8R84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R84 entry

There are 6 chains in PDB entry 8R84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	SER 132	GLY 347
B	ALA 448	THR 571
L	ILE 345	TYR 576
K	ALA 448	SER 569
A	LEU 449	TYR 576
J	ASP 2	PRO 135

There are 16 helices in PDB entry 8R84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	N	168	180	Right-handed alpha
Helix 2	AA2	N	275	285	Right-handed alpha
Helix 3	AA3	N	297	301	Right-handed 310
Helix 4	AA4	N	321	325	Right-handed 310
Helix 5	AA5	B	460	466	Right-handed alpha
Helix 6	AA6	B	524	531	Right-handed alpha
Helix 7	AA7	L	353	361	Right-handed alpha
Helix 8	AA8	L	414	419	Right-handed alpha
Helix 9	AA9	L	463	467	Right-handed 310
Helix 10	AB1	L	496	498	Right-handed 310
Helix 11	AB2	L	524	531	Right-handed alpha
Helix 12	AB3	K	460	466	Right-handed alpha
Helix 13	AB4	K	496	498	Right-handed 310
Helix 14	AB5	K	525	530	Right-handed alpha
Helix 15	AB6	A	460	465	Right-handed alpha
Helix 16	AB7	A	525	531	Right-handed alpha

There are 24 sheets in PDB entry 8R84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	148	150	first strand
Strand 2	N	233	237	anti-parallel
Strand 3	N	186	190	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	152	153	first strand
Strand 2	N	160	161	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	243	248	first strand
Strand 2	N	255	261	anti-parallel
Strand 3	N	264	268	anti-parallel
Strand 4	N	308	310	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	470	479	anti-parallel
Strand 3	B	515	523	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	470	479	anti-parallel
Strand 3	B	515	523	anti-parallel
Strand 4	B	506	507	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	547	552	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	569	first strand
Strand 2	A	564	569	parallel
Strand 3	J	60	63	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	346	350	first strand
Strand 2	L	364	372	anti-parallel
Strand 3	L	405	412	anti-parallel
Strand 4	L	393	396	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	389	390	first strand
Strand 2	L	378	383	anti-parallel
Strand 3	L	424	430	anti-parallel
Strand 4	L	437	441	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	515	523	anti-parallel
Strand 4	L	500	502	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	515	523	anti-parallel
Strand 4	L	506	507	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	493	494	first strand
Strand 2	L	485	490	anti-parallel
Strand 3	L	534	539	anti-parallel
Strand 4	L	547	552	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	565	567	first strand
Strand 2	L	561	569	parallel
Strand 3	J	32	42	parallel
Strand 4	J	15	22	anti-parallel
Strand 5	J	5	9	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	574	575	first strand
Strand 2	J	103	104	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	469	479	anti-parallel
Strand 3	K	515	524	anti-parallel
Strand 4	K	500	502	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	485	486	first strand
Strand 2	K	538	539	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	489	490	first strand
Strand 2	K	493	494	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	534	535	first strand
Strand 2	K	551	552	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	77	first strand
Strand 2	J	82	85	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	113	first strand
Strand 2	J	124	127	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	116	117	first strand
Strand 2	J	120	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R84

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R84