Analysis of interatomic Contacts of Structural Units in PDB entry:
8R8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R8D entry

There are 6 chains in PDB entry 8R8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 16VAL 243
E
 VAL 2SER 129
I
 SER 2LEU 109
H
 VAL 2SER 129
L
 SER 2LEU 109
A
 VAL 16VAL 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8R8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
55 60Right-handed 310
Helix 2
AA2
B
60 63Right-handed 310
Helix 3
AA3
B
164 169Right-handed alpha
Helix 4
AA4
B
172 176Right-handed 310
Helix 5
AA5
B
234 242Right-handed alpha
Helix 6
AA6
E
87 91Right-handed 310
Helix 7
AA7
I
80 84Right-handed 310
Helix 8
AA8
H
87 91Right-handed 310
Helix 9
AA9
L
80 84Right-handed 310
Helix 10
AB1
A
55 60Right-handed 310
Helix 11
AB2
A
60 63Right-handed 310
Helix 12
AB3
A
164 169Right-handed alpha
Helix 13
AB4
A
172 176Right-handed 310
Helix 14
AB5
A
231 233Right-handed 310
Helix 15
AB6
A
234 242Right-handed alpha
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There are 14 sheets in PDB entry 8R8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 159anti-parallel
Strand 3
B
137 140anti-parallel
Strand 4
B
198 200anti-parallel
Strand 5
B
209 215anti-parallel
Strand 6
B
226 230anti-parallel
Strand 7
B
180 183anti-parallel
Strand 8
B
162 163anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 37first strand
Strand 2
B
40 48anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
81 90anti-parallel
Strand 6
B
65 68anti-parallel
Strand 7
B
30 37anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
16 25anti-parallel
Strand 3
E
78 86anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
123 127parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
9 12first strand
Strand 2
I
104 108parallel
Strand 3
I
86 93anti-parallel
Strand 4
I
35 39anti-parallel
Strand 5
I
46 49anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
9 12first strand
Strand 2
I
104 108parallel
Strand 3
I
86 93anti-parallel
Strand 4
I
96 100anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
18 23first strand
Strand 2
I
71 76anti-parallel
Strand 3
I
63 68anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
16 25anti-parallel
Strand 3
H
78 86anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
123 127parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
104 108parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
35 39anti-parallel
Strand 5
L
46 49anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
104 108parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
96 100anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
63 68anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
156 159anti-parallel
Strand 3
A
137 140anti-parallel
Strand 4
A
198 200anti-parallel
Strand 5
A
209 215anti-parallel
Strand 6
A
226 229anti-parallel
Strand 7
A
180 183anti-parallel
Strand 8
A
162 163anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 37first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
81 90anti-parallel
Strand 6
A
65 68anti-parallel
Strand 7
A
30 37anti-parallel
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