Analysis of interatomic Contacts of Structural Units in PDB entry:
8R8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R8L entry

There are 3 chains in PDB entry 8R8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLY 396
B	SER 1	GLY 396
C	SER 1	GLY 396

There are 23 helices in PDB entry 8R8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	5	Right-handed 310
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	188	191	Right-handed 310
Helix 4	AA4	A	193	195	Right-handed 310
Helix 5	AA5	A	217	223	Right-handed alpha
Helix 6	AA6	A	237	240	Right-handed 310
Helix 7	AA7	A	260	268	Right-handed alpha
Helix 8	AA8	A	308	310	Right-handed 310
Helix 9	AA9	B	1	6	Right-handed 310
Helix 10	AB1	B	82	87	Right-handed 310
Helix 11	AB2	B	177	179	Right-handed 310
Helix 12	AB3	B	188	191	Right-handed 310
Helix 13	AB4	B	193	195	Right-handed 310
Helix 14	AB5	B	217	222	Right-handed alpha
Helix 15	AB6	B	237	240	Right-handed 310
Helix 16	AB7	B	260	268	Right-handed alpha
Helix 17	AB8	B	308	310	Right-handed 310
Helix 18	AB9	C	1	6	Right-handed 310
Helix 19	AC1	C	82	87	Right-handed 310
Helix 20	AC2	C	177	179	Right-handed 310
Helix 21	AC3	C	217	222	Right-handed alpha
Helix 22	AC4	C	237	240	Right-handed 310
Helix 23	AC5	C	260	268	Right-handed alpha

There are 24 sheets in PDB entry 8R8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	51	anti-parallel
Strand 4	A	138	145	anti-parallel
Strand 5	A	161	165	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	51	anti-parallel
Strand 4	A	280	283	anti-parallel
Strand 5	A	273	277	anti-parallel
Strand 6	A	212	216	anti-parallel
Strand 7	A	197	201	anti-parallel
Strand 8	A	126	131	anti-parallel
Strand 9	A	54	60	anti-parallel
Strand 10	A	227	228	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	287	297	anti-parallel
Strand 3	A	180	187	anti-parallel
Strand 4	A	172	175	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	73	first strand
Strand 2	A	109	121	anti-parallel
Strand 3	A	90	99	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	254	256	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	325	332	anti-parallel
Strand 3	A	371	375	anti-parallel
Strand 4	A	356	357	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	363	364	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	379	385	anti-parallel
Strand 3	A	388	394	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	31	35	parallel
Strand 3	B	38	51	anti-parallel
Strand 4	B	138	145	anti-parallel
Strand 5	B	161	165	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	31	35	parallel
Strand 3	B	38	51	anti-parallel
Strand 4	B	280	283	anti-parallel
Strand 5	B	273	277	anti-parallel
Strand 6	B	212	216	anti-parallel
Strand 7	B	197	201	anti-parallel
Strand 8	B	126	131	anti-parallel
Strand 9	B	54	60	anti-parallel
Strand 10	B	227	228	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	181	186	anti-parallel
Strand 4	B	172	175	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	73	first strand
Strand 2	B	109	121	anti-parallel
Strand 3	B	90	99	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	254	256	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	356	357	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	363	364	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	385	anti-parallel
Strand 3	B	388	394	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	31	35	parallel
Strand 3	C	38	51	anti-parallel
Strand 4	C	138	145	anti-parallel
Strand 5	C	161	165	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	31	35	parallel
Strand 3	C	38	51	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	273	277	anti-parallel
Strand 6	C	212	216	anti-parallel
Strand 7	C	197	201	anti-parallel
Strand 8	C	126	131	anti-parallel
Strand 9	C	54	60	anti-parallel
Strand 10	C	227	229	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	26	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	181	187	anti-parallel
Strand 4	C	172	175	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	72	first strand
Strand 2	C	109	121	anti-parallel
Strand 3	C	90	99	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	248	first strand
Strand 2	C	251	256	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	320	first strand
Strand 2	C	325	332	anti-parallel
Strand 3	C	371	375	anti-parallel
Strand 4	C	356	357	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	379	385	anti-parallel
Strand 3	C	388	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R8L