Analysis of interatomic Contacts of Structural Units in PDB entry:
8R8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R8N entry

There are 2 chains in PDB entry 8R8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1THR 242
B
 ASP 3THR 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8R8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 15Right-handed alpha
Helix 2
AA2
A
26 37Right-handed alpha
Helix 3
AA3
A
46 59Right-handed alpha
Helix 4
AA4
A
64 93Right-handed alpha
Helix 5
AA5
A
103 114Right-handed alpha
Helix 6
AA6
A
124 138Right-handed alpha
Helix 7
AA7
A
149 160Right-handed alpha
Helix 8
AA8
A
170 176Right-handed alpha
Helix 9
AA9
A
189 212Right-handed alpha
Helix 10
AB1
A
222 233Right-handed alpha
Helix 11
AB2
B
5 15Right-handed alpha
Helix 12
AB3
B
26 37Right-handed alpha
Helix 13
AB4
B
46 59Right-handed alpha
Helix 14
AB5
B
64 93Right-handed alpha
Helix 15
AB6
B
103 114Right-handed alpha
Helix 16
AB7
B
124 139Right-handed alpha
Helix 17
AB8
B
149 160Right-handed alpha
Helix 18
AB9
B
190 212Right-handed alpha
Helix 19
AC1
B
222 233Right-handed alpha
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There are 2 sheets in PDB entry 8R8N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
40 43parallel
Strand 3
A
96 101parallel
Strand 4
A
117 120parallel
Strand 5
A
142 147parallel
Strand 6
A
163 166parallel
Strand 7
A
215 220parallel
Strand 8
A
236 240parallel
Strand 9
A
20 24parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
40 44parallel
Strand 3
B
97 101parallel
Strand 4
B
117 120parallel
Strand 5
B
142 147parallel
Strand 6
B
161 167parallel
Strand 7
B
215 220parallel
Strand 8
B
236 240parallel
Strand 9
B
20 24parallel
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