Analysis of interatomic Contacts of Structural Units in PDB entry:
8R8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R8O entry

There is 1 chain in PDB entry 8R8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 7LEU 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8R8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
46 55Right-handed alpha
Helix 4
AA4
A
55 64Right-handed alpha
Helix 5
AA5
A
71 90Right-handed alpha
Helix 6
AA6
A
100 111Right-handed alpha
Helix 7
AA7
A
119 137Right-handed alpha
Helix 8
AA8
A
138 163Right-handed alpha
Helix 9
AA9
A
173 184Right-handed alpha
Helix 10
AB1
A
192 204Right-handed alpha
Helix 11
AB2
A
211 237Right-handed alpha
Helix 12
AB3
A
247 258Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8R8O.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
41 45parallel
Strand 3
A
93 98parallel
Strand 4
A
114 118parallel
Strand 5
A
167 171parallel
Strand 6
A
187 191parallel
Strand 7
A
240 244parallel
Strand 8
A
261 264parallel
Strand 9
A
20 24parallel
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