Analysis of interatomic Contacts of Structural Units in PDB entry:
8R8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R8Q entry

There are 2 chains in PDB entry 8R8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 36GLY 446
B
 THR 38LEU 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8R8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 51Right-handed alpha
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
60 65Right-handed alpha
Helix 4
AA4
A
76 81Right-handed alpha
Helix 5
AA5
A
81 86Right-handed alpha
Helix 6
AA6
A
91 105Right-handed alpha
Helix 7
AA7
A
106 132Right-handed alpha
Helix 8
AA8
A
134 141Right-handed alpha
Helix 9
AA9
A
141 164Right-handed alpha
Helix 10
AB1
A
169 203Right-handed alpha
Helix 11
AB2
A
209 240Right-handed alpha
Helix 12
AB3
A
262 286Right-handed alpha
Helix 13
AB4
A
286 293Right-handed alpha
Helix 14
AB5
A
301 306Right-handed alpha
Helix 15
AB6
A
306 311Right-handed alpha
Helix 16
AB7
A
315 325Right-handed alpha
Helix 17
AB8
A
328 350Right-handed alpha
Helix 18
AB9
A
353 367Right-handed alpha
Helix 19
AC1
A
374 380Right-handed alpha
Helix 20
AC2
A
384 415Right-handed alpha
Helix 21
AC3
A
416 445Right-handed alpha
Helix 22
AC4
B
94 99Right-handed alpha
Helix 23
AC5
B
111 115Right-handed 310
Helix 24
AC6
B
157 162Right-handed alpha
Helix 25
AC7
B
314 321Right-handed alpha
Helix 26
AC8
B
365 391Right-handed alpha
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There are 4 sheets in PDB entry 8R8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
55 61anti-parallel
Strand 3
B
66 72anti-parallel
Strand 4
B
78 84anti-parallel
Strand 5
B
116 128anti-parallel
Strand 6
B
145 149anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
55 61anti-parallel
Strand 3
B
66 72anti-parallel
Strand 4
B
78 84anti-parallel
Strand 5
B
116 128anti-parallel
Strand 6
B
232 239anti-parallel
Strand 7
B
327 334anti-parallel
Strand 8
B
298 299anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
188 193anti-parallel
Strand 3
B
214 221anti-parallel
Strand 4
B
353 357anti-parallel
Strand 5
B
275 279anti-parallel
Strand 6
B
264 269anti-parallel
Strand 7
B
247 252anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
188 193anti-parallel
Strand 3
B
214 221anti-parallel
Strand 4
B
347 350anti-parallel
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