Analysis of interatomic Contacts of Structural Units in PDB entry:
8R96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R96 entry

There are 5 chains in PDB entry 8R96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	ALA 291
B	ASN 5	ALA 294
C	THR 4	LEU 290
D	LEU 3	ALA 291
E	ASN 5	LEU 290

There are 71 helices in PDB entry 8R96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	12	Right-handed 310
Helix 2	AA2	A	15	43	Right-handed alpha
Helix 3	AA3	A	44	47	Right-handed 310
Helix 4	AA4	A	48	50	Right-handed 310
Helix 5	AA5	A	51	78	Right-handed alpha
Helix 6	AA6	A	91	93	Right-handed 310
Helix 7	AA7	A	94	119	Right-handed alpha
Helix 8	AA8	A	123	149	Right-handed alpha
Helix 9	AA9	A	150	155	Right-handed 310
Helix 10	AB1	A	156	189	Right-handed alpha
Helix 11	AB2	A	190	208	Right-handed alpha
Helix 12	AB3	A	209	216	Right-handed alpha
Helix 13	AB4	A	217	221	Right-handed 310
Helix 14	AB5	A	223	263	Right-handed alpha
Helix 15	AB6	B	8	12	Right-handed 310
Helix 16	AB7	B	16	43	Right-handed alpha
Helix 17	AB8	B	44	47	Right-handed 310
Helix 18	AB9	B	48	50	Right-handed 310
Helix 19	AC1	B	51	78	Right-handed alpha
Helix 20	AC2	B	91	93	Right-handed 310
Helix 21	AC3	B	94	119	Right-handed alpha
Helix 22	AC4	B	123	149	Right-handed alpha
Helix 23	AC5	B	150	155	Right-handed 310
Helix 24	AC6	B	156	189	Right-handed alpha
Helix 25	AC7	B	190	208	Right-handed alpha
Helix 26	AC8	B	209	216	Right-handed alpha
Helix 27	AC9	B	217	221	Right-handed 310
Helix 28	AD1	B	223	263	Right-handed alpha
Helix 29	AD2	C	8	12	Right-handed 310
Helix 30	AD3	C	15	43	Right-handed alpha
Helix 31	AD4	C	44	47	Right-handed 310
Helix 32	AD5	C	48	50	Right-handed 310
Helix 33	AD6	C	51	78	Right-handed alpha
Helix 34	AD7	C	91	93	Right-handed 310
Helix 35	AD8	C	94	119	Right-handed alpha
Helix 36	AD9	C	123	149	Right-handed alpha
Helix 37	AE1	C	150	155	Right-handed 310
Helix 38	AE2	C	156	189	Right-handed alpha
Helix 39	AE3	C	190	208	Right-handed alpha
Helix 40	AE4	C	209	216	Right-handed alpha
Helix 41	AE5	C	217	221	Right-handed 310
Helix 42	AE6	C	223	263	Right-handed alpha
Helix 43	AE7	D	8	12	Right-handed 310
Helix 44	AE8	D	15	43	Right-handed alpha
Helix 45	AE9	D	44	47	Right-handed 310
Helix 46	AF1	D	48	50	Right-handed 310
Helix 47	AF2	D	51	78	Right-handed alpha
Helix 48	AF3	D	91	93	Right-handed 310
Helix 49	AF4	D	94	119	Right-handed alpha
Helix 50	AF5	D	123	149	Right-handed alpha
Helix 51	AF6	D	150	155	Right-handed 310
Helix 52	AF7	D	156	189	Right-handed alpha
Helix 53	AF8	D	190	208	Right-handed alpha
Helix 54	AF9	D	209	216	Right-handed alpha
Helix 55	AG1	D	217	221	Right-handed 310
Helix 56	AG2	D	223	263	Right-handed alpha
Helix 57	AG3	E	8	12	Right-handed 310
Helix 58	AG4	E	15	43	Right-handed alpha
Helix 59	AG5	E	44	47	Right-handed 310
Helix 60	AG6	E	48	50	Right-handed 310
Helix 61	AG7	E	51	78	Right-handed alpha
Helix 62	AG8	E	91	93	Right-handed 310
Helix 63	AG9	E	94	119	Right-handed alpha
Helix 64	AH1	E	123	149	Right-handed alpha
Helix 65	AH2	E	150	155	Right-handed 310
Helix 66	AH3	E	156	186	Right-handed alpha
Helix 67	AH4	E	187	189	Right-handed 310
Helix 68	AH5	E	190	208	Right-handed alpha
Helix 69	AH6	E	209	216	Right-handed alpha
Helix 70	AH7	E	217	221	Right-handed 310
Helix 71	AH8	E	223	263	Right-handed alpha

There are 15 sheets in PDB entry 8R96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	86	89	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	277	280	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	B	287	288	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	E	284	285	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	86	89	anti-parallel
Strand 3	B	80	82	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	277	280	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	C	287	288	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	87	89	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	277	280	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	D	287	288	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	86	89	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	274	first strand
Strand 2	D	277	280	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	E	287	288	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	83	first strand
Strand 2	E	86	89	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	274	first strand
Strand 2	E	277	280	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R96

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R96