Analysis of interatomic Contacts of Structural Units in PDB entry:
8R99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R99 entry

There is 1 chain in PDB entry 8R99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10ASN 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8R99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 69Right-handed alpha
Helix 2
AA2
A
98 104Right-handed alpha
Helix 3
AA3
A
110 131Right-handed alpha
Helix 4
AA4
A
139 141Right-handed 310
Helix 5
AA5
A
175 179Right-handed 310
Helix 6
AA6
A
180 185Right-handed alpha
Helix 7
AA7
A
192 209Right-handed alpha
Helix 8
AA8
A
217 230Right-handed alpha
Helix 9
AA9
A
237 243Right-handed 310
Helix 10
AB1
A
256 261Right-handed alpha
Helix 11
AB2
A
265 276Right-handed alpha
Helix 12
AB3
A
285 292Right-handed alpha
Helix 13
AB4
A
292 297Right-handed alpha
Helix 14
AB5
A
303 307Right-handed 310
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There are 3 sheets in PDB entry 8R99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
88 92anti-parallel
Strand 5
A
77 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
143 145anti-parallel
Strand 3
A
151 153anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
160 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il