Analysis of interatomic Contacts of Structural Units in PDB entry:
8R9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R9B entry

There are 4 chains in PDB entry 8R9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 311
B
 LEU 3PRO 310
C
 ARG 8ASN 311
D
 ALA 9ASN 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8R9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 69Right-handed alpha
Helix 2
AA2
A
98 104Right-handed alpha
Helix 3
AA3
A
110 131Right-handed alpha
Helix 4
AA4
A
139 141Right-handed 310
Helix 5
AA5
A
157 163Right-handed alpha
Helix 6
AA6
A
174 179Right-handed 310
Helix 7
AA7
A
180 185Right-handed alpha
Helix 8
AA8
A
192 209Right-handed alpha
Helix 9
AA9
A
217 230Right-handed alpha
Helix 10
AB1
A
239 243Right-handed 310
Helix 11
AB2
A
256 261Right-handed alpha
Helix 12
AB3
A
265 276Right-handed alpha
Helix 13
AB4
A
285 291Right-handed alpha
Helix 14
AB5
A
292 297Right-handed alpha
Helix 15
AB6
A
303 307Right-handed 310
Helix 16
AB7
B
57 69Right-handed alpha
Helix 17
AB8
B
98 104Right-handed alpha
Helix 18
AB9
B
110 131Right-handed alpha
Helix 19
AC1
B
139 141Right-handed 310
Helix 20
AC2
B
157 163Right-handed alpha
Helix 21
AC3
B
174 179Right-handed 310
Helix 22
AC4
B
180 185Right-handed alpha
Helix 23
AC5
B
192 209Right-handed alpha
Helix 24
AC6
B
217 230Right-handed alpha
Helix 25
AC7
B
239 243Right-handed 310
Helix 26
AC8
B
256 261Right-handed alpha
Helix 27
AC9
B
265 276Right-handed alpha
Helix 28
AD1
B
285 291Right-handed alpha
Helix 29
AD2
B
292 297Right-handed alpha
Helix 30
AD3
B
303 307Right-handed 310
Helix 31
AD4
C
61 69Right-handed alpha
Helix 32
AD5
C
98 104Right-handed alpha
Helix 33
AD6
C
110 131Right-handed alpha
Helix 34
AD7
C
139 141Right-handed 310
Helix 35
AD8
C
174 179Right-handed 310
Helix 36
AD9
C
180 185Right-handed alpha
Helix 37
AE1
C
192 209Right-handed alpha
Helix 38
AE2
C
217 230Right-handed alpha
Helix 39
AE3
C
239 243Right-handed 310
Helix 40
AE4
C
256 261Right-handed alpha
Helix 41
AE5
C
265 276Right-handed alpha
Helix 42
AE6
C
285 291Right-handed alpha
Helix 43
AE7
C
292 297Right-handed alpha
Helix 44
AE8
C
303 307Right-handed 310
Helix 45
AE9
D
59 69Right-handed alpha
Helix 46
AF1
D
98 104Right-handed alpha
Helix 47
AF2
D
110 131Right-handed alpha
Helix 48
AF3
D
139 141Right-handed 310
Helix 49
AF4
D
174 179Right-handed 310
Helix 50
AF5
D
180 185Right-handed alpha
Helix 51
AF6
D
191 209Right-handed alpha
Helix 52
AF7
D
217 230Right-handed alpha
Helix 53
AF8
D
239 243Right-handed 310
Helix 54
AF9
D
256 261Right-handed alpha
Helix 55
AG1
D
265 276Right-handed alpha
Helix 56
AG2
D
285 291Right-handed alpha
Helix 57
AG3
D
292 297Right-handed alpha
Helix 58
AG4
D
303 307Right-handed 310
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There are 8 sheets in PDB entry 8R9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 20first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
37 44anti-parallel
Strand 4
A
86 92anti-parallel
Strand 5
A
77 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
143 145anti-parallel
Strand 3
A
151 153anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 21first strand
Strand 2
B
24 31anti-parallel
Strand 3
B
37 44anti-parallel
Strand 4
B
86 92anti-parallel
Strand 5
B
77 83anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
143 145anti-parallel
Strand 3
B
151 153anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 20first strand
Strand 2
C
25 31anti-parallel
Strand 3
C
37 42anti-parallel
Strand 4
C
87 92anti-parallel
Strand 5
C
77 82anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 97first strand
Strand 2
C
143 145anti-parallel
Strand 3
C
151 153anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 20first strand
Strand 2
D
25 31anti-parallel
Strand 3
D
37 42anti-parallel
Strand 4
D
88 92anti-parallel
Strand 5
D
77 81anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 97first strand
Strand 2
D
143 145anti-parallel
Strand 3
D
151 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il