Analysis of interatomic Contacts of Structural Units in PDB entry:
8R9O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R9O entry

There are 2 chains in PDB entry 8R9O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10CYS 312
B
 LYS 10CYS 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8R9O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 69Right-handed alpha
Helix 2
AA2
A
98 104Right-handed alpha
Helix 3
AA3
A
110 131Right-handed alpha
Helix 4
AA4
A
139 141Right-handed 310
Helix 5
AA5
A
175 179Right-handed 310
Helix 6
AA6
A
180 186Right-handed alpha
Helix 7
AA7
A
192 209Right-handed alpha
Helix 8
AA8
A
217 229Right-handed alpha
Helix 9
AA9
A
256 261Right-handed alpha
Helix 10
AB1
A
265 276Right-handed alpha
Helix 11
AB2
A
285 291Right-handed alpha
Helix 12
AB3
A
292 297Right-handed alpha
Helix 13
AB4
A
303 307Right-handed 310
Helix 14
AB5
B
58 69Right-handed alpha
Helix 15
AB6
B
98 104Right-handed alpha
Helix 16
AB7
B
110 131Right-handed alpha
Helix 17
AB8
B
139 141Right-handed 310
Helix 18
AB9
B
175 179Right-handed 310
Helix 19
AC1
B
180 185Right-handed alpha
Helix 20
AC2
B
192 209Right-handed alpha
Helix 21
AC3
B
217 230Right-handed alpha
Helix 22
AC4
B
237 243Right-handed 310
Helix 23
AC5
B
256 261Right-handed alpha
Helix 24
AC6
B
265 276Right-handed alpha
Helix 25
AC7
B
285 291Right-handed alpha
Helix 26
AC8
B
292 297Right-handed alpha
Helix 27
AC9
B
303 307Right-handed 310
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There are 6 sheets in PDB entry 8R9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 20first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
37 40anti-parallel
Strand 4
A
89 92anti-parallel
Strand 5
A
77 80anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
143 145anti-parallel
Strand 3
A
151 153anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
160 161anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 20first strand
Strand 2
B
25 31anti-parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
89 92anti-parallel
Strand 5
B
79 80anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
143 145anti-parallel
Strand 3
B
151 153anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
160 161anti-parallel
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