Analysis of interatomic Contacts of Structural Units in PDB entry:
8RA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RA0 entry

There is 1 chain in PDB entry 8RA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2VAL 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8RA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 13Right-handed alpha
Helix 2
AA2
A
29 46Right-handed alpha
Helix 3
AA3
A
61 74Right-handed alpha
Helix 4
AA4
A
86 98Right-handed alpha
Helix 5
AA5
A
121 124Right-handed 310
Helix 6
AA6
A
160 175Right-handed alpha
Helix 7
AA7
A
190 195Right-handed alpha
Helix 8
AA8
A
197 203Right-handed alpha
Helix 9
AA9
A
216 227Right-handed alpha
Helix 10
AB1
A
235 247Right-handed alpha
Helix 11
AB2
A
268 280Right-handed alpha
Helix 12
AB3
A
346 353Right-handed alpha
Helix 13
AB4
A
392 403Right-handed alpha
Helix 14
AB5
A
433 448Right-handed alpha
Helix 15
AB6
A
469 478Right-handed alpha
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There are 8 sheets in PDB entry 8RA0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
207 210parallel
Strand 4
A
181 184parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
53 57parallel
Strand 3
A
101 104parallel
Strand 4
A
117 119parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 145first strand
Strand 2
A
155 159anti-parallel
Strand 3
A
343 344anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
259 262parallel
Strand 3
A
284 289parallel
Strand 4
A
293 297anti-parallel
Strand 5
A
310 311anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 321first strand
Strand 2
A
329 335anti-parallel
Strand 3
A
358 367anti-parallel
Strand 4
A
354 355anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 321first strand
Strand 2
A
329 335anti-parallel
Strand 3
A
358 367anti-parallel
Strand 4
A
373 378anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
A
388 391anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 412first strand
Strand 2
A
421 428anti-parallel
Strand 3
A
451 456parallel
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