Analysis of interatomic Contacts of Structural Units in PDB entry:
8RAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RAV entry

There are 2 chains in PDB entry 8RAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12ILE 930
B
 SER 227LEU 625
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8RAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
81 95Right-handed alpha
Helix 4
AA4
A
128 132Right-handed 310
Helix 5
AA5
A
184 195Right-handed alpha
Helix 6
AA6
A
209 220Right-handed alpha
Helix 7
AA7
A
228 233Right-handed 310
Helix 8
AA8
A
236 245Right-handed alpha
Helix 9
AA9
A
258 262Right-handed 310
Helix 10
AB1
A
263 278Right-handed alpha
Helix 11
AB2
A
279 286Right-handed 310
Helix 12
AB3
A
295 299Right-handed 310
Helix 13
AB4
A
303 310Right-handed alpha
Helix 14
AB5
A
325 331Right-handed alpha
Helix 15
AB6
A
335 348Right-handed alpha
Helix 16
AB7
A
352 369Right-handed alpha
Helix 17
AB8
A
370 379Right-handed alpha
Helix 18
AB9
A
380 384Right-handed 310
Helix 19
AC1
A
386 397Right-handed alpha
Helix 20
AC2
A
400 413Right-handed alpha
Helix 21
AC3
A
413 424Right-handed alpha
Helix 22
AC4
A
428 436Right-handed alpha
Helix 23
AC5
A
436 458Right-handed alpha
Helix 24
AC6
A
460 465Right-handed alpha
Helix 25
AC7
A
475 504Right-handed alpha
Helix 26
AC8
A
527 529Right-handed 310
Helix 27
AC9
A
530 536Right-handed alpha
Helix 28
AD1
A
553 586Right-handed alpha
Helix 29
AD2
A
588 614Right-handed alpha
Helix 30
AD3
A
639 644Right-handed alpha
Helix 31
AD4
A
674 691Right-handed alpha
Helix 32
AD5
A
723 739Right-handed alpha
Helix 33
AD6
A
755 773Right-handed alpha
Helix 34
AD7
A
785 788Right-handed 310
Helix 35
AD8
A
789 794Right-handed alpha
Helix 36
AD9
A
826 834Right-handed alpha
Helix 37
AE1
A
837 852Right-handed alpha
Helix 38
AE2
A
871 894Right-handed alpha
Helix 39
AE3
A
900 919Right-handed alpha
Helix 40
AE4
A
920 929Right-handed alpha
Helix 41
AE5
B
230 241Right-handed alpha
Helix 42
AE6
B
260 271Right-handed alpha
Helix 43
AE7
B
289 300Right-handed alpha
Helix 44
AE8
B
312 318Right-handed alpha
Helix 45
AE9
B
411 422Right-handed alpha
Helix 46
AF1
B
433 446Right-handed alpha
Helix 47
AF2
B
459 463Right-handed 310
Helix 48
AF3
B
464 476Right-handed alpha
Helix 49
AF4
B
489 494Right-handed alpha
Helix 50
AF5
B
496 512Right-handed alpha
Helix 51
AF6
B
515 520Right-handed 310
Helix 52
AF7
B
521 525Right-handed 310
Helix 53
AF8
B
538 545Right-handed alpha
Helix 54
AF9
B
559 565Right-handed alpha
Helix 55
AG1
B
569 582Right-handed alpha
Helix 56
AG2
B
586 603Right-handed alpha
Helix 57
AG3
B
607 616Right-handed alpha
Helix 58
AG4
B
620 630Right-handed alpha
Helix 59
AG5
B
634 655Right-handed alpha
Helix 60
AG6
B
655 663Right-handed alpha
Helix 61
AG7
B
665 679Right-handed alpha
Helix 62
AG8
B
681 688Right-handed alpha
Helix 63
AG9
B
690 697Right-handed alpha
Helix 64
AH1
B
709 738Right-handed alpha
Helix 65
AH2
B
782 815Right-handed alpha
Helix 66
AH3
B
817 843Right-handed alpha
Helix 67
AH4
B
864 871Right-handed alpha
Helix 68
AH5
B
899 919Right-handed alpha
Helix 69
AH6
B
951 966Right-handed alpha
Helix 70
AH7
B
982 1000Right-handed alpha
Helix 71
AH8
B
1011 1016Right-handed alpha
Helix 72
AH9
B
1016 1021Right-handed alpha
Helix 73
AI1
B
1067 1076Right-handed alpha
Helix 74
AI2
B
1079 1113Right-handed alpha
Helix 75
AI3
B
1115 1121Right-handed alpha
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There are 11 sheets in PDB entry 8RAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
43 46anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
99 105parallel
Strand 6
A
117 123anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
198 202parallel
Strand 3
A
147 154parallel
Strand 4
A
159 167anti-parallel
Strand 5
A
172 179anti-parallel
Strand 6
A
291 293parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
707 711parallel
Strand 3
A
744 748parallel
Strand 4
A
777 781parallel
Strand 5
A
664 668parallel
Strand 6
A
797 804parallel
Strand 7
A
813 819anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
521 525anti-parallel
Strand 3
A
549 552anti-parallel
Strand 4
A
540 544anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
699 703parallel
Strand 3
A
631 637anti-parallel
Strand 4
A
653 658anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
280 286anti-parallel
Strand 3
B
255 259anti-parallel
Strand 4
B
247 251anti-parallel
Strand 5
B
304 309parallel
Strand 6
B
328 334anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
354 356anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 458first strand
Strand 2
B
425 429parallel
Strand 3
B
368 374parallel
Strand 4
B
386 393anti-parallel
Strand 5
B
400 407anti-parallel
Strand 6
B
526 527parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
744 747first strand
Strand 2
B
750 757anti-parallel
Strand 3
B
777 781anti-parallel
Strand 4
B
769 773anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
850 852first strand
Strand 2
B
926 930parallel
Strand 3
B
856 862anti-parallel
Strand 4
B
880 884anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
935 938first strand
Strand 2
B
971 975parallel
Strand 3
B
1004 1008parallel
Strand 4
B
891 894parallel
Strand 5
B
1025 1030parallel
Strand 6
B
1059 1061anti-parallel
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