Analysis of interatomic Contacts of Structural Units in PDB entry:
8RAW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RAW entry

There are 2 chains in PDB entry 8RAW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 13	ILE 930
B	SER 227	HIS 630

There are 72 helices in PDB entry 8RAW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	47	57	Right-handed alpha
Helix 3	AA3	A	69	73	Right-handed 310
Helix 4	AA4	A	81	95	Right-handed alpha
Helix 5	AA5	A	184	195	Right-handed alpha
Helix 6	AA6	A	207	220	Right-handed alpha
Helix 7	AA7	A	228	233	Right-handed 310
Helix 8	AA8	A	236	245	Right-handed alpha
Helix 9	AA9	A	258	262	Right-handed 310
Helix 10	AB1	A	263	278	Right-handed alpha
Helix 11	AB2	A	295	299	Right-handed 310
Helix 12	AB3	A	303	310	Right-handed alpha
Helix 13	AB4	A	325	331	Right-handed alpha
Helix 14	AB5	A	335	348	Right-handed alpha
Helix 15	AB6	A	352	369	Right-handed alpha
Helix 16	AB7	A	369	379	Right-handed alpha
Helix 17	AB8	A	379	384	Right-handed alpha
Helix 18	AB9	A	386	397	Right-handed alpha
Helix 19	AC1	A	400	412	Right-handed alpha
Helix 20	AC2	A	413	421	Right-handed alpha
Helix 21	AC3	A	429	457	Right-handed alpha
Helix 22	AC4	A	475	504	Right-handed alpha
Helix 23	AC5	A	529	536	Right-handed alpha
Helix 24	AC6	A	553	586	Right-handed alpha
Helix 25	AC7	A	588	614	Right-handed alpha
Helix 26	AC8	A	639	645	Right-handed alpha
Helix 27	AC9	A	674	691	Right-handed alpha
Helix 28	AD1	A	723	739	Right-handed alpha
Helix 29	AD2	A	755	773	Right-handed alpha
Helix 30	AD3	A	785	788	Right-handed 310
Helix 31	AD4	A	789	794	Right-handed alpha
Helix 32	AD5	A	826	834	Right-handed alpha
Helix 33	AD6	A	837	855	Right-handed alpha
Helix 34	AD7	A	871	891	Right-handed alpha
Helix 35	AD8	A	902	919	Right-handed alpha
Helix 36	AD9	A	920	929	Right-handed alpha
Helix 37	AE1	B	230	243	Right-handed alpha
Helix 38	AE2	B	260	271	Right-handed alpha
Helix 39	AE3	B	289	300	Right-handed alpha
Helix 40	AE4	B	312	317	Right-handed alpha
Helix 41	AE5	B	411	422	Right-handed alpha
Helix 42	AE6	B	433	445	Right-handed alpha
Helix 43	AE7	B	448	452	Right-handed 310
Helix 44	AE8	B	459	463	Right-handed 310
Helix 45	AE9	B	464	476	Right-handed alpha
Helix 46	AF1	B	489	494	Right-handed alpha
Helix 47	AF2	B	496	512	Right-handed alpha
Helix 48	AF3	B	513	514	Right-handed 310
Helix 49	AF4	B	515	520	Right-handed 310
Helix 50	AF5	B	521	525	Right-handed 310
Helix 51	AF6	B	538	545	Right-handed alpha
Helix 52	AF7	B	559	565	Right-handed alpha
Helix 53	AF8	B	569	582	Right-handed alpha
Helix 54	AF9	B	586	603	Right-handed alpha
Helix 55	AG1	B	605	615	Right-handed alpha
Helix 56	AG2	B	620	630	Right-handed alpha
Helix 57	AG3	B	634	655	Right-handed alpha
Helix 58	AG4	B	655	661	Right-handed alpha
Helix 59	AG5	B	665	679	Right-handed alpha
Helix 60	AG6	B	681	688	Right-handed alpha
Helix 61	AG7	B	690	697	Right-handed alpha
Helix 62	AG8	B	709	738	Right-handed alpha
Helix 63	AG9	B	782	815	Right-handed alpha
Helix 64	AH1	B	817	843	Right-handed alpha
Helix 65	AH2	B	864	870	Right-handed alpha
Helix 66	AH3	B	899	919	Right-handed alpha
Helix 67	AH4	B	951	966	Right-handed alpha
Helix 68	AH5	B	982	1000	Right-handed alpha
Helix 69	AH6	B	1011	1016	Right-handed alpha
Helix 70	AH7	B	1016	1021	Right-handed alpha
Helix 71	AH8	B	1067	1076	Right-handed alpha
Helix 72	AH9	B	1079	1111	Right-handed alpha

There are 11 sheets in PDB entry 8RAW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	43	46	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	99	105	parallel
Strand 6	A	117	123	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	198	202	parallel
Strand 3	A	147	154	parallel
Strand 4	A	159	167	anti-parallel
Strand 5	A	172	179	anti-parallel
Strand 6	A	291	293	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	707	711	parallel
Strand 3	A	744	748	parallel
Strand 4	A	777	781	parallel
Strand 5	A	664	668	parallel
Strand 6	A	797	806	parallel
Strand 7	A	811	819	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	516	first strand
Strand 2	A	520	526	anti-parallel
Strand 3	A	548	552	anti-parallel
Strand 4	A	540	544	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	625	first strand
Strand 2	A	699	703	parallel
Strand 3	A	631	637	anti-parallel
Strand 4	A	653	658	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	280	286	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	246	251	anti-parallel
Strand 5	B	303	309	parallel
Strand 6	B	328	334	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	355	356	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	458	first strand
Strand 2	B	425	429	parallel
Strand 3	B	368	374	parallel
Strand 4	B	386	393	anti-parallel
Strand 5	B	400	407	anti-parallel
Strand 6	B	526	527	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	744	747	first strand
Strand 2	B	750	757	anti-parallel
Strand 3	B	777	781	anti-parallel
Strand 4	B	769	773	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	852	first strand
Strand 2	B	926	930	parallel
Strand 3	B	856	862	anti-parallel
Strand 4	B	880	884	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	938	first strand
Strand 2	B	971	975	parallel
Strand 3	B	1004	1008	parallel
Strand 4	B	891	895	parallel
Strand 5	B	1025	1030	parallel
Strand 6	B	1059	1061	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RAW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RAW