Analysis of interatomic Contacts of Structural Units in PDB entry:
8RB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RB0 entry

There are 2 chains in PDB entry 8RB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 12	ILE 930
B	SER 227	SER 634

There are 71 helices in PDB entry 8RB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	47	58	Right-handed alpha
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	81	95	Right-handed alpha
Helix 5	AA5	A	128	132	Right-handed 310
Helix 6	AA6	A	184	195	Right-handed alpha
Helix 7	AA7	A	209	220	Right-handed alpha
Helix 8	AA8	A	229	233	Right-handed 310
Helix 9	AA9	A	236	245	Right-handed alpha
Helix 10	AB1	A	254	262	Right-handed 310
Helix 11	AB2	A	265	278	Right-handed alpha
Helix 12	AB3	A	282	286	Right-handed 310
Helix 13	AB4	A	303	310	Right-handed alpha
Helix 14	AB5	A	325	331	Right-handed alpha
Helix 15	AB6	A	335	348	Right-handed alpha
Helix 16	AB7	A	352	369	Right-handed alpha
Helix 17	AB8	A	369	379	Right-handed alpha
Helix 18	AB9	A	380	384	Right-handed 310
Helix 19	AC1	A	386	396	Right-handed alpha
Helix 20	AC2	A	400	413	Right-handed alpha
Helix 21	AC3	A	413	423	Right-handed alpha
Helix 22	AC4	A	429	436	Right-handed alpha
Helix 23	AC5	A	436	458	Right-handed alpha
Helix 24	AC6	A	475	504	Right-handed alpha
Helix 25	AC7	A	527	534	Right-handed 310
Helix 26	AC8	A	554	586	Right-handed alpha
Helix 27	AC9	A	588	614	Right-handed alpha
Helix 28	AD1	A	639	644	Right-handed alpha
Helix 29	AD2	A	674	692	Right-handed alpha
Helix 30	AD3	A	724	737	Right-handed alpha
Helix 31	AD4	A	755	773	Right-handed alpha
Helix 32	AD5	A	784	793	Right-handed 310
Helix 33	AD6	A	826	834	Right-handed alpha
Helix 34	AD7	A	837	854	Right-handed alpha
Helix 35	AD8	A	869	894	Right-handed alpha
Helix 36	AD9	A	900	919	Right-handed alpha
Helix 37	AE1	A	920	930	Right-handed alpha
Helix 38	AE2	B	230	242	Right-handed alpha
Helix 39	AE3	B	260	271	Right-handed alpha
Helix 40	AE4	B	289	300	Right-handed alpha
Helix 41	AE5	B	312	318	Right-handed alpha
Helix 42	AE6	B	411	422	Right-handed alpha
Helix 43	AE7	B	433	445	Right-handed alpha
Helix 44	AE8	B	459	463	Right-handed 310
Helix 45	AE9	B	464	476	Right-handed alpha
Helix 46	AF1	B	488	494	Right-handed alpha
Helix 47	AF2	B	496	512	Right-handed alpha
Helix 48	AF3	B	515	520	Right-handed 310
Helix 49	AF4	B	521	525	Right-handed 310
Helix 50	AF5	B	538	546	Right-handed alpha
Helix 51	AF6	B	559	565	Right-handed alpha
Helix 52	AF7	B	569	582	Right-handed alpha
Helix 53	AF8	B	586	603	Right-handed alpha
Helix 54	AF9	B	606	616	Right-handed alpha
Helix 55	AG1	B	620	630	Right-handed alpha
Helix 56	AG2	B	634	662	Right-handed alpha
Helix 57	AG3	B	665	679	Right-handed alpha
Helix 58	AG4	B	681	688	Right-handed alpha
Helix 59	AG5	B	690	697	Right-handed alpha
Helix 60	AG6	B	709	738	Right-handed alpha
Helix 61	AG7	B	759	761	Right-handed 310
Helix 62	AG8	B	782	815	Right-handed alpha
Helix 63	AG9	B	817	843	Right-handed alpha
Helix 64	AH1	B	864	870	Right-handed alpha
Helix 65	AH2	B	900	919	Right-handed alpha
Helix 66	AH3	B	951	966	Right-handed alpha
Helix 67	AH4	B	982	1000	Right-handed alpha
Helix 68	AH5	B	1011	1016	Right-handed alpha
Helix 69	AH6	B	1016	1021	Right-handed alpha
Helix 70	AH7	B	1067	1076	Right-handed alpha
Helix 71	AH8	B	1079	1113	Right-handed alpha

There are 11 sheets in PDB entry 8RB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	42	46	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	99	105	parallel
Strand 6	A	117	123	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	198	202	parallel
Strand 3	A	147	152	parallel
Strand 4	A	160	167	anti-parallel
Strand 5	A	172	179	anti-parallel
Strand 6	A	290	293	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	707	711	parallel
Strand 3	A	744	748	parallel
Strand 4	A	778	781	parallel
Strand 5	A	664	668	parallel
Strand 6	A	797	801	parallel
Strand 7	A	818	819	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	515	first strand
Strand 2	A	521	525	anti-parallel
Strand 3	A	549	552	anti-parallel
Strand 4	A	540	544	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	625	first strand
Strand 2	A	699	703	parallel
Strand 3	A	633	637	anti-parallel
Strand 4	A	653	655	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	804	807	first strand
Strand 2	A	810	813	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	280	286	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	246	251	anti-parallel
Strand 5	B	303	309	parallel
Strand 6	B	328	334	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	458	first strand
Strand 2	B	425	429	parallel
Strand 3	B	368	374	parallel
Strand 4	B	386	393	anti-parallel
Strand 5	B	400	407	anti-parallel
Strand 6	B	526	527	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	747	first strand
Strand 2	B	750	757	anti-parallel
Strand 3	B	777	781	anti-parallel
Strand 4	B	769	773	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	852	first strand
Strand 2	B	926	930	parallel
Strand 3	B	856	862	anti-parallel
Strand 4	B	880	882	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	938	first strand
Strand 2	B	971	975	parallel
Strand 3	B	1004	1008	parallel
Strand 4	B	891	895	parallel
Strand 5	B	1025	1030	parallel
Strand 6	B	1059	1061	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RB0